PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01004868G0120

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HB-other

Protein Properties

Length: 360aa MW: 39884.9 Da PI: 6.8357

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01004868G0120	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.3	4e-21	54	109	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k PH01004868G0120 54 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 109 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-22	39	105	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.72E-20	42	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	51	111	IPR001356	Homeobox domain
SMART	SM00389	2.1E-19	52	115	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-18	54	109	IPR001356	Homeobox domain
CDD	cd00086	3.31E-19	54	112	No hit	No description
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	10.833	205	293	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEMELSGGSG SGHLDGLLSF AGVDDERDQK PQHSGHEQAD GGQQQSAAAS NSKKKRYHRH 60 TAHQIQQMEA LFKECPHPDD KQRLKLSQEL GLKPRQVKFW FQNRRTQMKA QQDRADNVIL 120 RAENDSLKSE NYRLQAAIRN VVCPNCGHAA VLGEMTYEEQ QLRIDNARLK DEQSVMGCAD 180 LIPPVVPQQI ADHGVAYVGA MAPVQEQDKQ LVLDLASTAA DHLAKMCRAN EPLWVRRRGA 240 TSEIMAVDEH VQMFSWPVDG GKQGDVAVAR TEGTRDSAVV IMNSITLVDA FLDALVSVYA 300 SINYVKLMHT DAKKKKTGYA EQMDGAVPFD CLQGKNHSGD KQWSCFWSSG QRISPLGNY*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEMELSGGSG SGHLDGLLSF AGVDDERDQK PQHSGHEQAD GGQQQSAAAS NSKKKRYHRH  60
TAHQIQQMEA LFKECPHPDD KQRLKLSQEL GLKPRQVKFW FQNRRTQMKA QQDRADNVIL  120
RAENDSLKSE NYRLQAAIRN VVCPNCGHAA VLGEMTYEEQ QLRIDNARLK DEQSVMGCAD  180
LIPPVVPQQI ADHGVAYVGA MAPVQEQDKQ LVLDLASTAA DHLAKMCRAN EPLWVRRRGA  240
TSEIMAVDEH VQMFSWPVDG GKQGDVAVAR TEGTRDSAVV IMNSITLVDA FLDALVSVYA  300
SINYVKLMHT DAKKKKTGYA EQMDGAVPFD CLQGKNHSGD KQWSCFWSSG QRISPLGNY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01004868G0120

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ250986	1e-145	AJ250986.2 Zea mays mRNA for OCL4 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798256.1	1e-150	homeobox-leucine zipper protein ROC3
Refseq	XP_025798257.1	1e-150	homeobox-leucine zipper protein ROC3
Swissprot	Q336P2	1e-145	ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A0E0MB47	1e-157	A0A0E0MB47_ORYPU; Uncharacterized protein
STRING	OPUNC10G17890.1	1e-157	(Oryza punctata)
STRING	OPUNC10G17920.1	1e-157	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7846	34	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	7e-66	homeobox-7

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]