PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004816G0120
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 351aa    MW: 36956.4 Da    PI: 4.0498
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004816G0120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.67.3e-0959138170
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..........rergferspkqCkekwenlnkrykkikegekk 70 
                      +Wt  e+laL++ +  +++   r+ ++ ++W+ v++++          ++r   r + +C+ +we l+ +y +++++e +
  PH01004816G0120  59 EWTAAETLALVAEVAAVDDGWARSVSAFQKWAIVAENLasseaaagggSSRRRGRAASECRRRWEALAADYGAVRRWEVR 138
                      5*******************************************99997777789**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7660126IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDPNDADLPC IIQALPALPP SPSPKLQTLV QVLPVTPNSS KLSRRPPSPR RTRSGGAPEW  60
TAAETLALVA EVAAVDDGWA RSVSAFQKWA IVAENLASSE AAAGGGSSRR RGRAASECRR  120
RWEALAADYG AVRRWEVRTG GRYWEMGAAA RRKAGLPAEF DAEVYGAMDA LIRVEEALLA  180
DAAGAGGGGE EEVEGLVGAG GGGGAEVGEE DGGEVGEEEE DEEAGEEEEE DGDDSEGMQV  240
DAGNADASDD LEVCETDTNN EPKRSQNDAL ELANKLHENA QHIHMILKEE ASEDAGQNLA  300
LAGSISPDAM ETTRQKADEL IKSLGGLVSY LNQFTDLIKE NGFENVVGMN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004816G0120
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701598.11e-147trihelix transcription factor ASR3
TrEMBLA0A368PHJ71e-146A0A368PHJ7_SETIT; Uncharacterized protein
STRINGONIVA02G05990.11e-137(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-10sequence-specific DNA binding transcription factors