PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004687G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 281aa    MW: 30389.1 Da    PI: 8.0279
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004687G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-0984131552
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                      kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l   
  PH01004687G0080  84 KRAKRILANRQSAARSKERKARYIIELERKVQTLQTEATTLSAQLTLF 131
                      9****************************************9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.1E-1580144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.4582145IPR004827Basic-leucine zipper domain
PfamPF001702.6E-884130IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-784129No hitNo description
SuperFamilySSF579592.18E-1084135No hitNo description
CDDcd147035.34E-2385134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDIEKISSGP AAAGSDRDRA AETSSPPWPK HRHSSSVDGS GLFSPGGSAA RKDAAAAAAL  60
AEVMEAKKAM TPEQIAEIAA IDPKRAKRIL ANRQSAARSK ERKARYIIEL ERKVQTLQTE  120
ATTLSAQLTL FQRDTTGLST ENAELKIRLQ VMEQQAQLRD ALNDALKQEV ERLKIATGEM  180
TNSSEIYNMG LQHVPYNSSF FPLSQQNTAQ HQGGAQLPPP FHPPHSNVPN HQMLSHPNTL  240
PDIMQQDHLG RLQGLDIGKV PLVVKSEGSS ISASESSSTF *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004687G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692850.0AK369285.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2088F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795608.11e-155transcription factor RF2b
SwissprotQ6S4P41e-150RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A0A9NWC61e-156A0A0A9NWC6_ARUDO; Uncharacterized protein
STRINGPavir.Ib01574.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.12e-69bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]