PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01004633G0110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 229aa MW: 24955.8 Da PI: 8.2977 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.3e-18 | 92 | 146 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ ++ +s+++++eLA++l+L+ rqV vWFqNrRa+ k PH01004633G0110 92 RKKLQLTKEQSTLLEDSFRVQNILSHAQKQELARQLNLSARQVEVWFQNRRARTK 146 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114 | 9.3e-37 | 92 | 180 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk++l+keq++lLE+sF+ ++ L++ +K+elar+L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++e eL++ PH01004633G0110 92 RKKLQLTKEQSTLLEDSFRVQNILSHAQKQELARQLNLSARQVEVWFQNRRARTKLKQTEVDCESLKRCCESLTDENQRLKHELMELQR 180 69*************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 19 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-19 | 73 | 146 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.38E-19 | 77 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.524 | 88 | 148 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.4E-15 | 90 | 152 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.2E-16 | 92 | 146 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.96E-13 | 92 | 149 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 123 | 146 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.5E-15 | 148 | 191 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.7E-10 | 148 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEEEDRGAWL GLGIGGGGCA PRRSHGERRP SVQLDVLFPQ HVKEEGGCDH EQAVNKKGGK 60 GARQRIKIGD DGRSHGASPS DGGNDGSDGG TRKKLQLTKE QSTLLEDSFR VQNILSHAQK 120 QELARQLNLS ARQVEVWFQN RRARTKLKQT EVDCESLKRC CESLTDENQR LKHELMELQR 180 SAAAAAAGSQ LYVQFPRSTE MVNFCPSCEK ATVISGGEMS SKSSSSSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 148 | RRARTKLKQ |
2 | 154 | 159 | ESLKRC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01004633G0110 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966133.1 | 2e-90 | homeobox-leucine zipper protein HOX18 | ||||
Swissprot | Q5Z6F6 | 7e-69 | HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18 | ||||
TrEMBL | A0A368QXX7 | 5e-89 | A0A368QXX7_SETIT; Uncharacterized protein | ||||
STRING | Si007238m | 1e-89 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-42 | HD-ZIP family protein |