PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01004605G0030

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 511aa MW: 56309.8 Da PI: 5.126

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01004605G0030	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.4	6.9e-50	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf FhP+d el+ +yLkkk++g+++e+ +vi+evdiyk+ePwdLp+ ++ ++++w+fF++ d+ky++g+r+nrat +gyWk+tgkd+++ PH01004605G0030 9 LPPGFGFHPKDTELIFHYLKKKISGQNIEF-DVIPEVDIYKHEPWDLPAkcNLPIQDNKWHFFASPDRKYPNGSRSNRATIAGYWKSTGKDRTI 101 79*************************9.9************6244555999********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++g+kktLvf++gr p+g++t+W+mhey + PH01004605G0030 102 KM-SNRTIGTKKTLVFHEGRPPSGRRTQWIMHEYYI 136 9.8999**************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-57	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	54.435	9	159	IPR003441	NAC domain
Pfam	PF02365	4.8E-23	10	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
METLRDLALP PGFGFHPKDT ELIFHYLKKK ISGQNIEFDV IPEVDIYKHE PWDLPAKCNL 60 PIQDNKWHFF ASPDRKYPNG SRSNRATIAG YWKSTGKDRT IKMSNRTIGT KKTLVFHEGR 120 PPSGRRTQWI MHEYYIDENE CQACPDMKDA FVLCRVTKRD GWTSEKDTEV DNSDPHPQQP 180 NDAATSVISA EQPASAVASI IGAEQPNDVA TSVTSAELPN DVDISATTAD IATPNGDDEL 240 QAWLKELFDP SFNPAHDPVS ADLYLAEQSA ESSNLQNLYA VAPKVELDYA SPNQNVADDT 300 EYLLTEDIYN ILCPGIDDFN HGVLQDPADQ AALAFANQTY MGMDAYTLPN NIVGGAQKEE 360 LQLPQKNDEP YLSNEAVDTG IIVRRRRATT PATCMSPSSG KVRLQVGINR MVTSNSESIN 420 QTFVDNSSRL DLMTNIEHQK KHAHDATSVK QSDAGKSSQD HNNQGFFRGV QKAFRGCSAV 480 GLNILVAVCM IGVAAAVVLH HGRHRPGVSL *

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

METLRDLALP PGFGFHPKDT ELIFHYLKKK ISGQNIEFDV IPEVDIYKHE PWDLPAKCNL  60
PIQDNKWHFF ASPDRKYPNG SRSNRATIAG YWKSTGKDRT IKMSNRTIGT KKTLVFHEGR  120
PPSGRRTQWI MHEYYIDENE CQACPDMKDA FVLCRVTKRD GWTSEKDTEV DNSDPHPQQP  180
NDAATSVISA EQPASAVASI IGAEQPNDVA TSVTSAELPN DVDISATTAD IATPNGDDEL  240
QAWLKELFDP SFNPAHDPVS ADLYLAEQSA ESSNLQNLYA VAPKVELDYA SPNQNVADDT  300
EYLLTEDIYN ILCPGIDDFN HGVLQDPADQ AALAFANQTY MGMDAYTLPN NIVGGAQKEE  360
LQLPQKNDEP YLSNEAVDTG IIVRRRRATT PATCMSPSSG KVRLQVGINR MVTSNSESIN  420
QTFVDNSSRL DLMTNIEHQK KHAHDATSVK QSDAGKSSQD HNNQGFFRGV QKAFRGCSAV  480
GLNILVAVCM IGVAAAVVLH HGRHRPGVSL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-43	4	159	15	168	NAC domain-containing protein 19
3swm_B	1e-43	4	159	15	168	NAC domain-containing protein 19
3swm_C	1e-43	4	159	15	168	NAC domain-containing protein 19
3swm_D	1e-43	4	159	15	168	NAC domain-containing protein 19
3swp_A	1e-43	4	159	15	168	NAC domain-containing protein 19
3swp_B	1e-43	4	159	15	168	NAC domain-containing protein 19
3swp_C	1e-43	4	159	15	168	NAC domain-containing protein 19
3swp_D	1e-43	4	159	15	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01004605G0030

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF484751	0.0	KF484751.1 Dendrocalamus latiflorus NAC domain-containing protein (NAC) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566632.1	0.0	NAC domain-containing protein 74
Swissprot	Q7GCL7	0.0	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	A0A2P0N9K6	0.0	A0A2P0N9K6_BAMEM; NAC4 transcription factor
STRING	BRADI2G09530.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7560	38	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	7e-67	NAC domain containing protein 57

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]