PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004539G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 327aa    MW: 36281.2 Da    PI: 5.8987
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004539G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.61.1e-22115169155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rl+Wt+eLH++Fv+a ++L  s  ++Pk+ilelm+ + Lt+e+v SHLQkYRl
  PH01004539G0070 115 KQRLVWTTELHKKFVDAHDRLLASGDTVPKKILELMNDPALTRENVGSHLQKYRL 169
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-24113173IPR009057Homeodomain-like
SuperFamilySSF466894.66E-15113172IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-18115169IPR006447Myb domain, plants
PfamPF002491.8E-5118168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSMRGNDNCF VRAYRPLTMP AGMEEFETFL QSMMNRMSQD SRSPVASPEG ESNASTATSA  60
ITRISSSGSR ATRRRNQERE TTNQEAEQNS VQTTNHEAEQ NSEDGEEQQQ PAPKKQRLVW  120
TTELHKKFVD AHDRLLASGD TVPKKILELM NDPALTRENV GSHLQKYRLA MKQRESKPPT  180
MTQAHCSAEG GIAYQNIIMA NRAAVTHQPA TVVAASGHMP FSSFNAQTVI EAPTASGIQN  240
HCPENVSKEH MIPKVPEGDE AMERCIAQKE MHSTVQVGHE SVAELAVPNS RHSDGSSQED  300
LSKIFQQCLN NDSEPSWDYE FLHRSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-14112173262ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004539G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2089145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-17response regulator 12