PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004526G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 262aa    MW: 27897.5 Da    PI: 7.5016
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004526G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82e-23123221199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f k+lt+sd+++ g +++p+ +ae++            +  ++  d +g sW++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +
  PH01004526G0170 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldyA----ADPPVQSVDVHGASWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RGD 210
                      89**************************76441....34458889********************************************..448 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                       +el+v+++r+
  PH01004526G0170 211 AGELHVGIRRA 221
                      999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-34116223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-27116222IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-21122220No hitNo description
PROSITE profilePS5086312.478123222IPR003340B3 DNA binding domain
SMARTSM010194.8E-20123222IPR003340B3 DNA binding domain
PfamPF023624.4E-21123221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MITFADLTEP APGAERCVDR QLWLACAGGM RTVPPVGSSV YYFPQGHAEH ALGLAAGADL  60
SAARVPALVP CRVATVRYMA DPDTDEVFAR IRLVPLHASD AKAELEGDGT AAPDEEQEKP  120
ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QSVDVHGASW KFRHIYRGTP  180
RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD AGELHVGIRR AKRGFCGAGG GGEEASMPGW  240
DQYAGLMRGN LGPCGTAKGR GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-572022321227Auxin response factor 1
4ldw_A3e-572022321227Auxin response factor 1
4ldw_B3e-572022321227Auxin response factor 1
4ldx_A4e-572022321227Auxin response factor 1
4ldx_B4e-572022321227Auxin response factor 1
4ldy_A3e-572022321227Auxin response factor 1
4ldy_B3e-572022321227Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004526G0170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432300.0AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence.
GenBankAP0061680.0AP006168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1469H02.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622752.11e-151auxin response factor 8
SwissprotQ6K2231e-152ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A0E0CNP21e-152A0A0E0CNP2_9ORYZ; Auxin response factor
STRINGOMERI02G23420.11e-153(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-86auxin response factor 10