PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004435G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 318aa    MW: 33228.6 Da    PI: 5.9205
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004435G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-19143192255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g W+AeIrdp     +  +r++lg+f+tae Aa+a++ a++ ++g
  PH01004435G0130 143 RYRGVRQRP-WGTWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDDAALGFRG 192
                      8********.**********7.....337**********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.82E-19142202No hitNo description
PfamPF008473.5E-12143192IPR001471AP2/ERF domain
SMARTSM003802.4E-34143206IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-21143202IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-32143202IPR001471AP2/ERF domain
PROSITE profilePS5103224.764143200IPR001471AP2/ERF domain
PRINTSPR003674.4E-11144155IPR001471AP2/ERF domain
PRINTSPR003674.4E-11166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MADPGQHRRQ LAGDGADDGE AVLTAAASPM LSRRRQAQEM SAMVSALARV VAGSAAATAS  60
SWKRPAEGEV SMEEAWRPYR GELAGAGAGA APSSFLADYM ATPGQYSPAA AAESQYRAAA  120
ADEKLSSLSS ADSGGSQSTP RKRYRGVRQR PWGTWAAEIR DPHKAARVWL GTFDTAEAAA  180
RAYDDAALGF RGSRAKLNFP ESATLPPPQQ PPAPTMPPRP EALLESQALS GGESYSQYAR  240
FLQGAGEPAL PSGSSGTPRT LASSMLYNFG SEGEAVGYLW QPESGSKDGG MGYPVTSSAA  300
WADYGSYPPT QRRDPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21142200463ATERF1
3gcc_A2e-21142200463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004435G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071252e-75AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
GenBankAK3620612e-75AK362061.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002B18.
GenBankAL7139022e-75AL713902.2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL8448742e-75AL844874.1 Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149682e-75AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126202e-75CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankCU4063552e-75CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.11e-85ethylene-responsive transcription factor ERF110
TrEMBLA0A0E0BPI74e-80A0A0E0BPI7_9ORYZ; Uncharacterized protein
STRINGOGLUM12G04880.17e-81(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-21related to AP2 6