PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004305G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 214aa    MW: 22272 Da    PI: 10.0622
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004305G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.41.4e-3261114255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PH01004305G0060  61 PRMRWTSTLHSRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 114
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-1658115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-2959115IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-2461114IPR006447Myb domain, plants
PfamPF002492.7E-762113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MLSASGRLNG MLSDTLRGYG APGSGVGLGI GAHHHLHSAQ PFGLASRFMP KLPAKRSMRA  60
PRMRWTSTLH SRFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKSTDK  120
PAASSGPTDG GSGDEDFPGA GQAASGGDNN MCLSRPFAEH RSTSEGAASS LGGGGDMDLS  180
SAGNTCTRWS NSSRFLGSGH IVLFSLSLAL SQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004305G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804688.11e-99probable transcription factor RL9
SwissprotQ0J2358e-78ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A0A9D9461e-105A0A0A9D946_ARUDO; Mwp1
STRINGPavir.J41082.1.p3e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-50G2-like family protein