PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004273G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 492aa    MW: 54092.6 Da    PI: 9.9376
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004273G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM768.7e-24531961128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra................. 77 
                      lp+G++F+Ptd+el+ e+L++kv+ ++             + eP  Lp     + ++ +fF++ +k+y+tg+rk+r+                 
  PH01004273G0140  53 LPAGVKFDPTDQELI-EHLEAKVRCDQG------------RPEPPFLP----RDARSRHFFHRPSKAYTTGNRKRRKiqppaaaatvdasgaas 129
                      799************.99****998884............458****9....345788******************88**************** PP

              NAM  78 ...............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                      ++ +W++tgk+++v++ +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y++
  PH01004273G0140 130 saggsapaaaqqqqqWSETRWHKTGKTRPVMV-GGRQRGCKKILVLYtnFGKHRKAEKTNWVMHQYHV 196
                      *********99988766889************.99************544799*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-2947113IPR003441NAC domain
PROSITE profilePS5100521.36153215IPR003441NAC domain
PfamPF023651.0E-1454196IPR003441NAC domain
SuperFamilySSF1019411.96E-29146215IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDGAAAAGTS SGSGSGHHLI GSRIEEHRKY MSESSCCPRC GHKIDRKLDW VGLPAGVKFD  60
PTDQELIEHL EAKVRCDQGR PEPPFLPRDA RSRHFFHRPS KAYTTGNRKR RKIQPPAAAA  120
TVDASGAASS AGGSAPAAAQ QQQQWSETRW HKTGKTRPVM VGGRQRGCKK ILVLYTNFGK  180
HRKAEKTNWV MHQYHVGEAE EEREGELVVS KIFYQTQPRQ FLVGMGALAP DHQRVQSRAD  240
EGVVHPGHHH LHRQHHDEHD HRRHHYAGQE QHRVAAAAAA AFHVSTPTDP IATLIAAPVH  300
QGSVVLRPAE PYDHGASYHH QEDERPHQPR KFDGRSTSGL EEVIMGCTSR RSKGGETSGG  360
KEGTEWQYPS FWPSDSQDHH GDKDDIGRKA KGKQKKKKER KENKDDITRK GFARYTFVKK  420
YSLYKETIKI ASDGGVTPTG CGCGGQQGAM GLSLIFVPLF PATVFGLKVL GGSGGGFAET  480
MAGAKAVRHF D*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004273G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037133e-93AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12.
GenBankAP0149623e-93AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126143e-93CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399940.11e-127NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F87e-77NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1E5VX011e-141A0A1E5VX01_9POAL; NAC domain-containing protein 73
STRINGGRMZM2G115721_P011e-103(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-67NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]