PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004198G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YC
Protein Properties Length: 183aa    MW: 20183.9 Da    PI: 9.5798
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004198G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC107.11.1e-3326637101
            NF-YC  37 kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
                      +misaeaPvl++kacelfilelt+rswlh eenkrrtl+++d+ aa+trtd+fdflvdi+pr+e 
  PH01004198G0020   2 RMISAEAPVLFAKACELFILELTIRSWLHVEENKRRTLQRNDVVAAITRTDVFDFLVDIMPREEA 66 
                      8*************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-18263IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-23263IPR009072Histone-fold
PfamPF008087.9E-10248IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRMISAEAPV LFAKACELFI LELTIRSWLH VEENKRRTLQ RNDVVAAITR TDVFDFLVDI  60
MPREEAKEEP GSALGFAVGG GAAGVSGEGP AAGLPYYYPP MGQSAPMMPA WHVLLWDPAW  120
QQGAADVDQG VGSFGEEGQG FTVHGGGGHE TPRRARIRRR ALQPRQHYAG RRRRHGSRWK  180
QH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-331633395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541RRTLQRN
2157173RRRALQPRQHYAGRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004198G0020
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919520.0FP091952.1 Phyllostachys edulis cDNA clone: bphylf052o15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306558.14e-72nuclear transcription factor Y subunit C-2-like
RefseqXP_021306559.14e-72nuclear transcription factor Y subunit C-2-like
SwissprotA6BLW44e-67NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2
TrEMBLA0A1B6QPC51e-70A0A1B6QPC5_SORBI; Uncharacterized protein
STRINGSb01g040980.22e-71(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73453551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.29e-40nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]