PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01004181G0160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 33351.8 Da PI: 8.0537 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.3 | 2.1e-51 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yL++k++g++l++ +i+evd+yk+ePwdLp+++ ++kewyf ++rd+ky++g+r+nra+ +gyWkatg dk++ PH01004181G0160 17 LPPGFRFHPTDEELVEHYLCRKAAGQRLPV-PIIAEVDLYKFEPWDLPERALFGTKEWYFTTPRDRKYPNGSRPNRAAGNGYWKATGADKPIAP 109 79****************************.88***************8877899*************************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++ g+kk Lvfy g+ap+g+ktdW+mheyrl PH01004181G0160 110 -RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 142 .999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-63 | 13 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.973 | 17 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-26 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGMAVRRERD AEAELNLPPG FRFHPTDEEL VEHYLCRKAA GQRLPVPIIA EVDLYKFEPW 60 DLPERALFGT KEWYFTTPRD RKYPNGSRPN RAAGNGYWKA TGADKPIAPR GRTLGIKKAL 120 VFYAGKAPRG VKTDWIMHEY RLADESRATT GAKKGSLRLD DWVLCRLCNK KNKWGKMQLG 180 KETKEEASDM ITSQSHSHSW GETRTPESEI VDNDPFPAFQ DPAAQMTMMV PKKEQEVDGG 240 ARNARNDLFV DLSYDDIQSM YSGLDMLPPG DDFYSSLFAS PRVKANQPGA GGMAPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-108 | 3 | 176 | 1 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01004181G0160 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096317 | 0.0 | FP096317.1 Phyllostachys edulis cDNA clone: bphyem105m10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650786.1 | 1e-170 | PREDICTED: NAC domain-containing protein 67-like | ||||
Swissprot | Q75HE5 | 1e-170 | NAC2_ORYSJ; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0E0KKM8 | 1e-172 | A0A0E0KKM8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G35740.1 | 1e-173 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4414 | 30 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 1e-87 | NAC family protein |
Publications ? help Back to Top | |||
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