PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004129G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 470aa    MW: 52360.6 Da    PI: 9.8318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004129G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.91.1e-32512181128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                      lp+G++F+Ptd+el+  +L++kv++       +           +i+   +i++++P++Lp  v+++  + +fF++ +k+y+tg+rk+r+    
  PH01004129G0090  51 LPAGVKFDPTDQELI-GHLEAKVRSGGvaaasH---PlidefipTIEGDdGICYTHPEKLP-GVTKDGLNRHFFHRPSKAYTTGNRKRRKiqpp 139
                      799************.89******999655551...044444333665546**********.555667799******************88*** PP

              NAM  78 ...........................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                                  ++ +W++tgk+++v++ +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  PH01004129G0090 140 ssaatvdasssgssaggsapaaaqqqqWSETRWHKTGKTRPVVV-GGRQRGCKKILVLYtnFGKHRKAEKTNWVMHQYHL 218
                      **********************9988766889************.99************544799*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3545136IPR003441NAC domain
PROSITE profilePS5100528.00551237IPR003441NAC domain
PfamPF023651.5E-1452218IPR003441NAC domain
SuperFamilySSF1019412.62E-35168237IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDGATAAGTS SGSGHHLIGS RIEEHRKYMS ESSCCPRCGH KIDRKLDWVG LPAGVKFDPT  60
DQELIGHLEA KVRSGGVAAA SHPLIDEFIP TIEGDDGICY THPEKLPGVT KDGLNRHFFH  120
RPSKAYTTGN RKRRKIQPPS SAATVDASSS GSSAGGSAPA AAQQQQWSET RWHKTGKTRP  180
VVVGGRQRGC KKILVLYTNF GKHRKAEKTN WVMHQYHLGE AEEEREGELV VSKIFYQTQP  240
RQFLVHEGFL FLNVGMGSSD HQQVQSRADE GVVHTGHHQL HRQHHDVQDH RRHHYAGQEQ  300
QRVAAAAVFH VSTPTDPIAT LIAAPLVHQG SVVLRPAEPY DHGASYHHLE TSGGKEGAEW  360
QYPSFWPSDS QDHHGDKDDT GRKAKGRNRK RKRRGHKTKV TSQGKVLKDT HCQEIFPVQV  420
NYKDCKELPN RPFFLTSGQT RRLKPHWGSN APQIDSSYLK HRLGLLELL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388393RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004129G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697751e-101EU969775.1 Zea mays clone 335447 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966092.11e-150uncharacterized protein LOC101753253
SwissprotQ9M0F81e-104NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A368QXL41e-149A0A368QXL4_SETIT; Uncharacterized protein
TrEMBLK3XWX71e-149K3XWX7_SETIT; Uncharacterized protein
STRINGSi006435m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-94NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]