PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01004097G0070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB_related | ||||||||
Protein Properties | Length: 248aa MW: 27406 Da PI: 7.0834 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.5e-15 | 29 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ +++++ ++lG++ W++Ia++++ Rt++++k++w+++l PH01004097G0070 29 RGNFTPHEEGIIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 74 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.24 | 1 | 23 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.67E-21 | 10 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-10 | 10 | 34 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.443 | 24 | 78 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-13 | 28 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 29 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.82E-10 | 31 | 74 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 35 | 79 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGRGTGGLMR CSKSCRLRWT NYLRPGIKRG NFTPHEEGII IHLQALLGNK WAAIASYLPQ 60 RTDNDIKNYW NTHLKKKVKR LQAQPDHSFQ NSTAPNVAVS PNYYNPRSTH QSLEAMQSMA 120 YPSTTTCSTA ASDEAATISK LFQTWMKPSP TAATNYKAMA AMQEFQEYQE GAAVSITNCK 180 DHIVINDDKS LSSEMVAPVM GRGEADYSST TATFSLLENW LIDDMPEQAM DGLMEISAGC 240 CADPIMF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-18 | 10 | 78 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01004097G0070 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083881 | 7e-93 | BT083881.1 Zea mays full-length cDNA clone ZM_BFb0050H17 mRNA, complete cds. | |||
GenBank | EU955550 | 7e-93 | EU955550.1 Zea mays clone 1536772 mRNA sequence. | |||
GenBank | KJ727611 | 7e-93 | KJ727611.1 Zea mays clone pUT5518 MYB transcription factor (MYB61) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979484.1 | 1e-111 | transcription factor MYB30 | ||||
Swissprot | B3VTV7 | 2e-56 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | K3ZJI0 | 1e-110 | K3ZJI0_SETIT; Uncharacterized protein | ||||
STRING | Si026733m | 1e-110 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 1e-54 | myb domain protein 60 |
Publications ? help Back to Top | |||
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