PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004029G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Nin-like
Protein Properties Length: 704aa    MW: 75984.7 Da    PI: 7.0286
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004029G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.65.7e-29478529152
           RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      aek++sle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++
  PH01004029G0080 478 AEKSLSLEELQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPFRKINKV 529
                      589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.393464549IPR003035RWP-RK domain
PfamPF020422.8E-26482529IPR003035RWP-RK domain
SuperFamilySSF542779.16E-20602693No hitNo description
PROSITE profilePS5174519.735606691IPR000270PB1 domain
SMARTSM006666.9E-21606691IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.4E-23607688No hitNo description
CDDcd064074.06E-35607690No hitNo description
PfamPF005641.1E-13607690IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MAVAAIHEIT VFLMHAPAGG SSDRSSQGGF PGKEAGAVKE RIARALRMYK DAADERGGGG  60
ALVQVWALVR DGDRRVLATR GQPFVLASQC HRLFQYRTIS LTHDFPVGGG AGDGEQGLPS  120
RVFDARAPEW TPNVQYYSSG EYARISYALI YDIQGSLALP ILDPDTRCCL AVLELVMTAP  180
MVRFSGEVDK LCKALQAVAL KGSEICHHAV EICNSEAIQL AMSEVSEILS TVCEAHKLPL  240
AQAWVRCKCC NPDTQCTLVD YSSAEHSSLT TAGAPFYLTD AGVCGFREAC VEHHLQRGQG  300
LVGKAAATRR PRFCTDVTKC SKDAYPLAHY ARLYGLVGCL VVCLQLQSDV SMNNSQEEYV  360
MEFFLPPDRR SVAEQKAALG AISAMIRECF GNLKAVAISN LQDLSLEIVA DGHQCVLRSD  420
HVVVADTPEL NGPGDDDRKF SDEDSANIEA VNVLNGFHIR ADDPRSQFGR KKMRRGKAEK  480
SLSLEELQRY FSGSLKDAAK SLGVCPTTMK RICRQHGISR WPFRKINKVN RSLDKIKRVV  540
ESVKCSPKLI ITASSSQPAP APAPHLPCLS SALGVASSQG SCQEPPFTNT ALRKPLQSSS  600
NGAGGVVTIK ASYRGDIVRF RVPCSAGVAA VKEEVAKRLG LEAGAFDVKY LDDDHEWVLL  660
SCDDDFQECL DVVPALPSAA AQVVRLMVQE VADNLGSSCG SSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004029G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627710.10.0protein NLP3-like
TrEMBLA0A0D9YM050.0A0A0D9YM05_9ORYZ; Uncharacterized protein
STRINGOGLUM02G02840.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.11e-165Nin-like family protein