PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003957G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family E2F/DP
Protein Properties Length: 1495aa    MW: 164756 Da    PI: 4.899
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003957G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.91.3e-26141206171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kf++ll+++++gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  PH01003957G0030 141 RYDSSLGLLTKKFINLLKQAQDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 206
                      6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-28138208IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-34141206IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.8E-17141204IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.0E-23143206IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146609.42E-48216322No hitNo description
SuperFamilySSF1440741.39E-33219322No hitNo description
PfamPF164211.2E-32221320IPR032198E2F transcription factor, CC-MB domain
SuperFamilySSF549287.39E-6493569IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd124224.38E-23494571No hitNo description
Gene3DG3DSA:3.30.70.3302.6E-9496574IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF529221.13E-23686782IPR009014Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II
PfamPF027807.3E-23693801IPR033248Transketolase, C-terminal domain
Gene3DG3DSA:3.40.50.9201.7E-26693790IPR009014Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II
SuperFamilySSF511262.62E-6862923IPR011050Pectin lyase fold/virulence factor
Gene3DG3DSA:2.160.20.101.8E-6875927IPR012334Pectin lyase fold
PfamPF070021.7E-329531063IPR010734Copine
Gene3DG3DSA:2.60.120.104.8E-611571240IPR014710RmlC-like jelly roll fold
SuperFamilySSF512065.25E-711571239IPR018490Cyclic nucleotide-binding-like
PROSITE profilePS5004210.46711581243IPR000595Cyclic nucleotide-binding domain
PROSITE profilePS5089313.29912191475IPR003439ABC transporter-like
CDDcd032335.01E-7512301457No hitNo description
SuperFamilySSF525402.42E-3112401474IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.9E-3312411464IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF000052.8E-1412441400IPR003439ABC transporter-like
SMARTSM003825.2E-512531453IPR003593AAA+ ATPase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005524Molecular FunctionATP binding
GO:0016887Molecular FunctionATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1495 aa     Download sequence    Send to blast
MAAGREQHIQ LTVIILSPDL EGTFLYGVLA DGKRAKKSWN SNLNQPFLSP TCTCILCAAP  60
SVSYCQLLKR KAASEENDAA ESSECMITSP GFIGSPLLTP VSGKFVKASK SKNKNNKAGP  120
QTPTSNVGSP LNPPTPAGSC RYDSSLGLLT KKFINLLKQA QDGILDLNNA AETLEVQKRR  180
IYDITNVLEG IGLIEKTLKN RIRWKGLDDS GVELDNGLSV LQTEVENLNL QEQALDERIS  240
DMREKLRGLT EDENNQRWLY VTEDDIKGLP CFQNETLIAI KAPHGTTLEV PDPDEAGDYL  300
QRRYRIVLRS TMGPIDVYLV SQFEEKFEEL GGLATPLRHA NVPKHRPVED FNTTNTGQSS  360
TSMDVEHNVQ HCQMSPQDPS ASHDFGGMTR IIPSDVDNLT WKIAEVQWDQ MDTDVFLSEE  420
VSTPRAHNQQ PATVGEPLIA TDSWSVSAEI VRKGIDGDSL DRRLDLSNGG VSGVVTHQLF  480
GEMPSHQDAI TGDVLRIIVS HVLYPVTKEV LHQILKVYGV EKITVFERAN RVETMVQLQS  540
WQEVKRARDA FHGRCIYEGC CFLDILLESP TPDSASTTTA RRDAEASAIA PEVVVADARS  600
SPSDTHPAGA DEPMSEPVSS PSSGWDWEAM FDEQKDRCLR MVTELNETLR TRLGQSTPSP  660
TLCDAQATST VANWDHVVAT AVPEEDYMLP LSQAEVIRKG GNITLNGWGA QLAVLEPACE  720
DAAKDGISCE LIDLKTLIPW DKETVEASVS KTGKLLVSHE APITGGFGAK IAASITEHCF  780
QWPPPAQVEI AGGRAELQPM PRQWFDCYQG GVPWMPLWPP PQGHGTLLEW SHKQAGIKSW  840
MTTFTIAEMG VLNSLVHGVI WVEQLLLLYW DYGEFQIVGT LLAPPDMGYW PTRLLQWINF  900
KWLHGFTIQG AGTVDGQSSL LRSASPANVS QQWQWHVSRA KLASGVAIIQ VGDTPNPYEQ  960
AISIIGRTLS RFDDENLIPC FGFGNATTHD QSVFSLYPDN RPCDGFEQAL DRYREIVPQL  1020
CLAGPTSFAP MIEIAIGIVD SSGGQCHVLL IIADGQVTRS VDTEIMARPI PTSKTEAEFA  1080
LSAVDVANCA LGDLLHYQIT DIDGKVSGSN QKSFWVYREA ADLDTRLQGL ERLFGALSAH  1140
MWPGMIMKSG FAAASEDLFH GVSNSLIAEL VMIMPTDYFA PKEDIILQKE RAVDSCVIVS  1200
RAVNMLTTVN GNEQVYMEVA EGDMFGKGLV TLFGSSNKRT IKILEDVSGI LKPSRLTLLL  1260
GPPSSGKSTL MRALTRKHDK NLKVSGKVTY CGHTFSELYP ERTSAYVSQY DPHNPEMTVR  1320
ERLDFSRRCL GIGARYDMLS ELARREQNAD LILKVLGIDN CADIIVGGEM KRGISGGQKK  1380
RVTTGEMLTG PTTALFMDEI STGLDSSSTF QIVKYIRQMV HVMSATVMIS LLQPPPETYN  1440
LFDDIILLSE GYTVYHGPRE NILEFFESAG FRCPERKGVA DFLQEVNSRI FPHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5nj3_A3e-311242148671306ATP-binding cassette sub-family G member 2
5nj3_B3e-311242148671306ATP-binding cassette sub-family G member 2
5njg_A3e-311242148671306ATP-binding cassette sub-family G member 2
5njg_B3e-311242148671306ATP-binding cassette sub-family G member 2
6eti_A3e-311242148662297ATP-binding cassette sub-family G member 2
6eti_B3e-311242148662297ATP-binding cassette sub-family G member 2
6feq_A3e-311242148662297ATP-binding cassette sub-family G member 2
6feq_B3e-311242148662297ATP-binding cassette sub-family G member 2
6ffc_A3e-311242148671306ATP-binding cassette sub-family G member 2
6ffc_B3e-311242148671306ATP-binding cassette sub-family G member 2
6hij_A3e-311242148662297ATP-binding cassette sub-family G member 2
6hij_B3e-311242148662297ATP-binding cassette sub-family G member 2
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003957G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0417250.0AB041725.1 Oryza sativa OsE2F1 mRNA for E2F homolog, complete cds.
GenBankAK0686890.0AK068689.1 Oryza sativa Japonica Group cDNA clone:J013161I16, full insert sequence.
GenBankHQ8588300.0HQ858830.1 Oryza sativa Japonica Group isolate UT1329 E2F-DP transcription factor mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-100E2F transcription factor 3