PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003923G0110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 28895.2 Da PI: 4.9271 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.1e-16 | 49 | 97 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +gr+ AeIr + r +r +lg+f+taeeAa++++a +l+g PH01003923G0110 49 FRGVRRRE-WGRYSAEIRNpW-----RrTREWLGTFDTAEEAARQYDAEVIRLHG 97 8****999.**********88.....55**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.321 | 24 | 50 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-6 | 24 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-9 | 25 | 36 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-18 | 48 | 105 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.916 | 48 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-22 | 48 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-24 | 48 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.01E-22 | 48 | 104 | No hit | No description |
PRINTS | PR00367 | 8.3E-9 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MNSKAKARVK KVVGEGPWTQ FRAQFRGVRR REWGRYSAEI RNPWRRMQFR GVRRREWGRY 60 SAEIRNPWRR TREWLGTFDT AEEAARQYDA EVIRLHGARI ITNFKKPAAA AANAGDAPLP 120 TPPSKSAPSG GASYDSSEES SHPAPSPTSV LQSFPPFAIS ASEPAKKPPP QPVPPPPATP 180 QEIAEAGGYF QLEDLTGDPD PIYGDQDLLN DFPELPALDF LSDNVLPELQ LDDLGAGLSP 240 TGWQQVDEFL IDLDFTDLEA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-13 | 48 | 104 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003923G0110 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967470.1 | 8e-43 | ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | A0A368R031 | 2e-41 | A0A368R031_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Eb00092.1.p | 6e-45 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 2e-20 | ethylene responsive element binding factor 4 |