PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003918G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 446aa    MW: 49270.9 Da    PI: 6.3017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003918G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l + ++++G g+W+t+++  g+ R++k+c++rw +yl
  PH01003918G0100 14 KGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding47.54.1e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE++l++++++ lG++ W+ Ia +++ gRt++++k+ w++
  PH01003918G0100  67 RGAFSQEEEDLIIELHAVLGNR-WSHIATRLP-GRTDNEIKNLWNS 110
                      89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.396961IPR017930Myb domain
SuperFamilySSF466892.73E-2912108IPR009057Homeodomain-like
SMARTSM007176.5E-121363IPR001005SANT/Myb domain
PfamPF002495.8E-151461IPR001005SANT/Myb domain
CDDcd001671.18E-101761No hitNo description
PROSITE profilePS5129425.68262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2565116IPR009057Homeodomain-like
SMARTSM007174.9E-1366114IPR001005SANT/Myb domain
PfamPF002495.9E-1467110IPR001005SANT/Myb domain
CDDcd001671.04E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSTV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIIE LHAVLGNRWS HIATRLPGRT DNEIKNLWNS CIKKKLRQQG  120
IDPNTHKPLT EVDRSKAAPT ISTERTSESS DVDPSSGGAL GNLSHLLSET AQSPELLPVL  180
GKHRTETPSL ARLKVPPKEL FLDQLASGHE NLPSGRSSGS IPNFPFQHLF CYSNEFSSRD  240
SGGTNSLWFN QNESSGSAVS TVMPPVSPST LSTPTGLNLS PDNPHSGGTG VHNAQFYWDT  300
ANPSSSSSTG SNGSNGLGFE LQSTSSLLEN SIFPWTDLAP DKDSQVHLEE ELKWPDLLHG  360
TFPETSAAMQ NLGQSLYEDV VKAESQFNME GLCAAWCQNL QPQQHIQVVT DMYDKDLQRM  420
SLSFENIEAT CSKMQGTEQW QKIEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003918G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7479400.0HM747940.1 Phyllostachys edulis MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457686.10.0transcription factor MYB61 isoform X1
TrEMBLE5G3F80.0E5G3F8_9POAL; MYB protein
STRINGSb03g011640.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.15e-89myb domain protein 61