PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003898G0190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 390aa MW: 43678.1 Da PI: 5.4455 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.4 | 6.3e-28 | 74 | 218 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G+ F P+d el+ ++L+ kv+ + + + +++e+ +i++++P++Lp vk + ++ +fF++ +++y g+rk+r PH01003898G0190 74 LPAGVMFAPSDLELL-KHLEGKVSPGNseshilI---NdfipTLEEAeGICYTHPENLP-GVKMDGSSSHFFHRIANAYGCGQRKRRRisnndr 162 799************.99*****99884555331...033334666667**********.566788999******************6577777 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128 k+ +W++tg++k++l+ +g ++g kk+Lv+y g++++g k +Wvmh+y+l PH01003898G0190 163 ticDKHIRWHKTGRSKTILD-NGVKKGWKKILVLYAGSKREGDkieKDNWVMHQYHL 218 76655788************.999***********9988888644489*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-32 | 59 | 237 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.528 | 74 | 237 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-11 | 75 | 218 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MEKITIDKCS LCGGMSDCKW SWIITGRGIA TKIRNATDLL TYRLGELVAE AWRECPNCKY 60 RIDNSDVSLQ WPGLPAGVMF APSDLELLKH LEGKVSPGNS ESHILINDFI PTLEEAEGIC 120 YTHPENLPGV KMDGSSSHFF HRIANAYGCG QRKRRRISNN DRTICDKHIR WHKTGRSKTI 180 LDNGVKKGWK KILVLYAGSK REGDKIEKDN WVMHQYHLGV EEDEKDGELV VSKVFYQLTS 240 KQIDKSEIDA VDGESDAFAV KIDPRTPKSN PPQPRRPNNS PCETEQNATI LQDQEEGESG 300 TSILHLKCEA ECSTWYAMSQ PVQDAALPDL DTPLQCNQVL DTGHEKPLPL DYPTIDALHG 360 SFPDLDNLGT LDDLQFGSQD SYGSWLHRI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 155 | RKRRR |
2 | 152 | 156 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003898G0190 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824945.1 | 1e-151 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X2 | ||||
Swissprot | Q6NQK2 | 5e-75 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0E0K1W4 | 1e-150 | A0A0E0K1W4_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A2S3I7M8 | 1e-150 | A0A2S3I7M8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PYT4 | 1e-149 | A0A3L6PYT4_PANMI; NAC domain-containing protein 8-like | ||||
STRING | Pavir.Gb01338.1.p | 1e-151 | (Panicum virgatum) | ||||
STRING | OPUNC02G20570.1 | 1e-151 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 2e-73 | NAC family protein |