PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003811G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 286aa    MW: 31548.6 Da    PI: 4.4063
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003811G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-1772122155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +g+W+AeIrd +     r  r+++g+f t+eeAa+a++a + +++ 
  PH01003811G0100  72 SRYRGVRRRS-WGQWAAEIRDpV-----RkSRVWIGTFQTEEEAAAAYEATASQFRA 122
                      79*****887.**********44.....55********************9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-1172122IPR001471AP2/ERF domain
CDDcd000186.93E-1472103No hitNo description
SuperFamilySSF541712.81E-1672122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-2273122IPR001471AP2/ERF domain
SMARTSM003801.0E-1673134IPR001471AP2/ERF domain
PROSITE profilePS5103219.96873130IPR001471AP2/ERF domain
PRINTSPR003679.6E-107485IPR001471AP2/ERF domain
PRINTSPR003679.6E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTPSLRKVRI FCSDPDATDS SDEDVQNAKK EKRMIREVLL PLNNSKNFKS AKTLVPCGTK  60
NLKGPEKKEP TSRYRGVRRR SWGQWAAEIR DPVRKSRVWI GTFQTEEEAA AAYEATASQF  120
RAELLAIKAQ PSVSDCAALP SSAAISCVSS SVSCEQKAQE EAHKVVPMEI DPEPVAKILL  180
NFSSTPRANE ISVDAYLGRI DELPVSDIVG PTDELPLDDF ARLAYVFPIS DFVGATDEPL  240
DNDYIGLADI SQLPLPITDP KFDLDAELDW DGFDLASMER ELEIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-11721231365Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003811G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238049.11e-126ethylene-responsive transcription factor ERF118
RefseqXP_010238050.11e-126ethylene-responsive transcription factor ERF118
RefseqXP_014757283.11e-126ethylene-responsive transcription factor ERF118
RefseqXP_024310935.11e-126ethylene-responsive transcription factor ERF118
TrEMBLI1IPB11e-124I1IPB1_BRADI; Uncharacterized protein
STRINGBRADI4G27850.11e-125(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.28e-17ERF family protein