PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003805G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 355aa    MW: 39623.6 Da    PI: 6.5114
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003805G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.8e-092522862155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      + +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  PH01003805G0010 252 RWPYPSEMEKAALAESTGLDAKQINNWFINQRKRH 286
                      569*****************************885 PP
2ELK36.61e-12206227122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++Ll+KYsgyL++L+ E+s
  PH01003805G0010 206 ELKNHLLNKYSGYLSNLWRELS 227
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-1757101IPR005540KNOX1
PfamPF037904.6E-205899IPR005540KNOX1
SMARTSM012561.7E-23105156IPR005541KNOX2
PfamPF037911.3E-20111154IPR005541KNOX2
PfamPF037892.5E-10206227IPR005539ELK domain
PROSITE profilePS5121310.528206226IPR005539ELK domain
SMARTSM011884.7E-7206227IPR005539ELK domain
PROSITE profilePS5007112.957226289IPR001356Homeobox domain
SuperFamilySSF466894.28E-18227295IPR009057Homeodomain-like
SMARTSM003897.1E-12228293IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-25231290IPR009057Homeodomain-like
CDDcd000866.97E-12235289No hitNo description
PfamPF059203.1E-16246285IPR008422Homeobox KN domain
PROSITE patternPS000270264287IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEQLPLLASG SKATTTAPLY LTLDNTTSPS TSPPPSVVAP SPASEPSRHS SHERGTDTIK  60
AKIMSHHLYP ALLRAFIECQ KIGAPPEVVG RLSALAGELE SHSDDQSQEP SDPELDKFME  120
TYCDVLVRYR QELIKPIQEA DEFFRTMEAQ MDSFVIVPNL SIVASPIFQA DDNSCEGGGS  180
SEDEQETGDV AGLPEITSPC REDDKELKNH LLNKYSGYLS NLWRELSKKK KKSKLPRDAR  240
QKLLHWWQLH YRWPYPSEME KAALAESTGL DAKQINNWFI NQRKRHWKPA PAAMDYRLQP  300
TYGTSSSPSA AFRMEGQYYT GGSSYKLHAC YEGGRVSCVA FRVVTCQGSL RFTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003805G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352051e-110BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds.
GenBankBT0406221e-110BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
GenBankKJ7275711e-110KJ727571.1 Zea mays clone pUT5431 HB transcription factor (HB110) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175441.11e-150homeobox protein knotted-1-like 4
SwissprotQ75LX71e-149KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A3B6IKN91e-155A0A3B6IKN9_WHEAT; Uncharacterized protein
STRINGOGLUM03G29380.11e-148(Oryza glumipatula)
STRINGTraes_4DS_66942ADD7.11e-148(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-83KNOTTED-like from Arabidopsis thaliana