PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003772G0180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 23172.8 Da PI: 5.1085 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.6e-19 | 55 | 104 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f+++e+Aa+a++aa+++++g PH01003772G0180 55 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFDSPEMAARAHDAAALAIKG 104 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.866 | 55 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-32 | 55 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 55 | 112 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-13 | 55 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-38 | 55 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.21E-21 | 56 | 113 | No hit | No description |
PRINTS | PR00367 | 2.9E-10 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MQEEHALSPV SNGSTTCGSC SSSLGSGPPT ATSPSDESGG GGGRKRPRRE LKHPTYRGVR 60 MRSWGKWVSE IREPRKKSRI WLGTFDSPEM AARAHDAAAL AIKGRAAHLN FPEISHELPR 120 PATAAPDDVR AAAALAAAMD RAPTAAAAQE TGNAEEPSSA TVHALPGDDG VDLALFDLPE 180 VLLEFGFALS PSTYDLSWYD VAADDFGFEP APLLLWEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-18 | 52 | 112 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003772G0180 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970180 | 2e-96 | EU970180.1 Zea mays clone 341615 dehydration-responsive element-binding protein 1B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194840.1 | 8e-89 | ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 3e-42 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A3B6QGA7 | 2e-87 | A0A3B6QGA7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453P8M1 | 2e-87 | A0A453P8M1_AEGTS; Uncharacterized protein | ||||
STRING | GRMZM2G041839_P01 | 8e-71 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 8e-28 | ERF family protein |
Publications ? help Back to Top | |||
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