PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003772G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 269aa    MW: 28364.5 Da    PI: 7.6447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003772G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-1987137155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g
  PH01003772G0170  87 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAAFAIKG 137
                      57*****887.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-3287147No hitNo description
PfamPF008471.5E-1387137IPR001471AP2/ERF domain
PROSITE profilePS5103223.73688145IPR001471AP2/ERF domain
SMARTSM003808.6E-3988151IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-2288146IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3288146IPR001471AP2/ERF domain
PRINTSPR003676.0E-1189100IPR001471AP2/ERF domain
PRINTSPR003676.0E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEADAIHAPT TSSSDSGSCV INGAQEPSKN SKPKHLKRKR STTFPPPSSQ QAPAEATGGA  60
RGEDSSRCTA IDERATSRKV GTAGRHPSYR GVRRRSWGKW VSEIREPRKK SRIWLGTFPT  120
AEMAARAHDV AAFAIKGSTA HLNFPHLAHV LPHPASTSPA DIQAAAAIAA ADGADQCESS  180
SSVAETTETS SAVSSGMAGS GEQENALFDL PDLLLDLRDG LWCSPIWTAV AADEYDVLHS  240
SSSSYVTKVN EQVPIGTRNM LSGPFALK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2081146773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003772G0170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076624e-85AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0050064e-85AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149584e-85AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3452324e-85AY345232.1 Oryza sativa transcription factor Rap212 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194839.11e-73ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ77e-51ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A287E3502e-76A0A287E350_HORVV; Uncharacterized protein
STRINGMLOC_75601.19e-77(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]