PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003770G0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 261aa MW: 27947 Da PI: 10.997 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 42.4 | 1.5e-13 | 170 | 216 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++r rr++kNRe+A rsR+RK+a++ eLe ++L eN++L+++ e PH01003770G0040 170 DRRHRRMIKNRESAARSRARKQAYTNELELALAQLRRENEMLINRQE 216 6899**************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.8E-8 | 167 | 232 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.197 | 169 | 219 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.0E-11 | 171 | 218 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 8.50E-22 | 171 | 224 | No hit | No description |
SuperFamily | SSF57959 | 8.75E-10 | 171 | 219 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-11 | 171 | 218 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 174 | 189 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MLGQAPVSFR ALRVGKVTLT AEGDLAHALW QVAGRMLGQA PVPFRALRVG KVTLTAEEIV 60 LNLEVTRRPQ FMDFLASAPV PQPPTPPPPP LPLPLPPTAL SLSSTLEFTY LSAGAGAGPP 120 SNSSSGDDSR GDFMPDSYAG ARTDIFSFAA RKHGAAADPP QCPGAGAGGD RRHRRMIKNR 180 ESAARSRARK QAYTNELELA LAQLRRENEM LINRQEVLNV RQRTAMAAQC SYAAVAPIAL 240 SDRGRTLTRK IGAILFATWN * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003770G0040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101652 | 0.0 | FP101652.1 Phyllostachys edulis cDNA clone: bphylf047d22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573205.1 | 2e-29 | protein FD | ||||
TrEMBL | I1HVY4 | 5e-28 | I1HVY4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G00300.1 | 8e-29 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14602 | 10 | 20 |