PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01003751G0100

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 266aa MW: 28471.1 Da PI: 8.645

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003751G0100	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	102	149	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq PH01003751G0100 102 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 149 8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.72E-10	96	153	No hit	No description
SuperFamily	SSF47459	1.83E-15	96	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-14	98	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	98	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.6E-7	102	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	104	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MELLLPPAAP VPAPTFPSDP HLVDCAARFS TFASPSPSPT PPSPPSAKRK ADPADRASKG 60 KAAKKGKTAA GGEEKAGGGG GEEEEKPAYV HVRARRGQAT DSHSLAERAR REKINARMEL 120 LKELVPGCSK VSGTALVLDE IINHVQSLQR QVEYLSMRLA AVNPRVDFGG LDNFLTTECG 180 RITGPNCKNG MDLEQVTWPE MGIHGARHLM QLQQQFWHGD LAHPHQTASQ WEKRGDAHPP 240 VFSNSSSSLF GYDLASSGKT GKANL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01003751G0100

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095332	0.0	FP095332.1 Phyllostachys edulis cDNA clone: bphyem123o05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227502.2	1e-135	transcription factor bHLH48
Swissprot	Q8VZ02	5e-54	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1D6P4V3	1e-133	A0A1D6P4V3_MAIZE; Putative HLH DNA-binding domain superfamily protein
TrEMBL	A0A446YQC5	1e-134	A0A446YQC5_TRITD; Uncharacterized protein
TrEMBL	I1GXA9	1e-134	I1GXA9_BRADI; Uncharacterized protein
STRING	GRMZM2G378653_P02	1e-137	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-50	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]