PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003717G0190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 27957.6 Da PI: 4.2543 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.4 | 9.3e-07 | 53 | 85 | 19 | 55 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 af+ Lr+l+P++ ++K + a+ L +++eY+k Lq PH01003717G0190 53 AFQILRDLIPHS----DQKRDRATFLLEVIEYVKFLQ 85 79*********9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.26E-5 | 53 | 87 | No hit | No description |
SuperFamily | SSF47459 | 5.37E-7 | 53 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-9 | 54 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MVTMRLWIHG LDRPSTVFFL SLSLCSVFQR NETEERIEIE IEGFWFGCFT PIAFQILRDL 60 IPHSDQKRDR ATFLLEVIEY VKFLQEKSSN RVSDDGMPDA APSTKNDSAT GLTFSGKFLD 120 DSIPAAPEML QNAQTVVESA ELNADSIELQ SQSQWQQLPC PTDCPDSNEV SNEHDELAID 180 EGTISVSSMY SQNSPSLSEL SLIATLVRLE LLKRNEGITM VYGSYNFSCK RFLNFFLLVH 240 LFPLPLVG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003717G0190 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178052.1 | 2e-53 | transcription factor BIM2-like | ||||
TrEMBL | A0A446YLD0 | 1e-52 | A0A446YLD0_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446YLG4 | 1e-52 | A0A446YLG4_TRITD; Uncharacterized protein | ||||
STRING | Traes_7DL_04FC0BF21.2 | 8e-53 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 7e-21 | BES1-interacting Myc-like protein 2 |