PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01003683G0160

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 331aa MW: 35494.1 Da PI: 8.1701

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003683G0160	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48	2.6e-15	242	285	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++Nk+L+k+ PH01003683G0160 242 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNKELQKK 285 79*************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-11	238	301	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.105	240	285	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.5E-15	242	285	No hit	No description
SuperFamily	SSF57959	6.0E-11	242	285	No hit	No description
Pfam	PF00170	1.4E-12	242	285	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.74E-25	242	287	No hit	No description
PROSITE pattern	PS00036	0	245	260	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDLKDGGVSE RRGAAPLARQ GSIYSLTFDE FQSTLGGMGD RLGKDFGSMN MDELLRSIWT 60 AEESQAMASA SASAAPEGEL QRQGSLTLPR TLSVKTVDEV WRDFVQEAPP GTVGGGGEAP 120 QPRWQPTLGE MTLEEFLAAN NSSIFFGNFG GANDAAGAGA MGFAPVGIGD PAMGNNGPMP 180 AVAGMGGGAV TVSPVDTAVA QLDSVDKGNA DLSSPMAPVP YPFEGVIRGR RSGGNVQKVV 240 ERRQRRMIKN RESAARSRAR KQAYTMELEA EVQKLKEQNK ELQKKQVYKF LVSSDRQIQI 300 NICPFCSIYP NTKLFMNTSK LQLFNRTLST *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01003683G0160

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004457	1e-108	AP004457.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0013B04.
GenBank	AP014964	1e-108	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304807.1	1e-136	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	1e-127	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A0E0LVU9	1e-144	A0A0E0LVU9_ORYPU; Uncharacterized protein
STRING	OPUNC08G15700.1	1e-145	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.2	1e-30	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]