PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003620G0120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family BBR-BPC
Protein Properties Length: 327aa    MW: 35690.8 Da    PI: 10.4474
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003620G0120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind371.41.6e-11313261301
        GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki........rernlalsekkaavaerd...................maflqrdk 65 
                      mdddgs   rn+g++e +    +nlglqlmss++ +rd+k+        +++ +  + ++  +++rd                   m+f+++d+
  PH01003620G0120   1 MDDDGSLGiRNWGFFETS---TRNLGLQLMSSVPaDRDTKQllsngpflHHQGHQHMPHHPHHHPRDggvgggapsgmpteapsmpMNFVRNDA 91 
                      9*****999*******99...78**********99******9******96666657778888999***************************** PP

        GAGA_bind  66 alaernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrq 154
                      +++    ++++r++k+l  l++ ++       +++p+g+++++gt+s+++lq++++p+ ++++   ++ee++  + iee+a +++e + +kkrq
  PH01003620G0120  92 WMHP---THHPRQSKMLYALTAGHAGHvvhaaHHEPAGYGIIPGTHSTHTLQMMQQPEPQPPPP--PKEECMPPPLIEENAGVINEPPPPKKRQ 180
                      ****...999******99999999877789999********************77766655555..599************************* PP

        GAGA_bind 155 rakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                      + ++pk++k kk+kk  ++++++ ++++  +r++ +kk++++v+ngv+lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCtttiS+yPLPvst
  PH01003620G0120 181 QRRQPKSPKLKKPKK-VAAPREDGAPDGPAPRRRGPKKTVGMVINGVDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPVST 273
                      ***************.67999999999988**************************************************************** PP

        GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      krrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk+ WAkHGtnkfvtir
  PH01003620G0120 274 KRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTLWAKHGTNKFVTIR 326
                      ****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.4E-1181326IPR010409GAGA-binding transcriptional activator
SMARTSM012263.6E-1921326IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDDDGSLGIR NWGFFETSTR NLGLQLMSSV PADRDTKQLL SNGPFLHHQG HQHMPHHPHH  60
HPRDGGVGGG APSGMPTEAP SMPMNFVRND AWMHPTHHPR QSKMLYALTA GHAGHVVHAA  120
HHEPAGYGII PGTHSTHTLQ MMQQPEPQPP PPPKEECMPP PLIEENAGVI NEPPPPKKRQ  180
QRRQPKSPKL KKPKKVAAPR EDGAPDGPAP RRRGPKKTVG MVINGVDLDL SRIPTPVCSC  240
TGAPQQCYRW GAGGWQSACC TTTISTYPLP VSTKRRGARI AGRKMSQGAF KKVLEKLAGE  300
GYNLNNPIDL KTLWAKHGTN KFVTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003620G0120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573749.11e-162barley B recombinant-like protein A
SwissprotP0DH881e-144BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH891e-144BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A0Q3FA071e-160A0A0Q3FA07_BRADI; Uncharacterized protein
TrEMBLI1I3241e-160I1I324_BRADI; Uncharacterized protein
STRINGBRADI3G21390.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.34e-62basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]