PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003620G0120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 327aa MW: 35690.8 Da PI: 10.4474 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 371.4 | 1.6e-113 | 1 | 326 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki........rernlalsekkaavaerd...................maflqrdk 65 mdddgs rn+g++e + +nlglqlmss++ +rd+k+ +++ + + ++ +++rd m+f+++d+ PH01003620G0120 1 MDDDGSLGiRNWGFFETS---TRNLGLQLMSSVPaDRDTKQllsngpflHHQGHQHMPHHPHHHPRDggvgggapsgmpteapsmpMNFVRNDA 91 9*****999*******99...78**********99******9******96666657778888999***************************** PP GAGA_bind 66 alaernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrq 154 +++ ++++r++k+l l++ ++ +++p+g+++++gt+s+++lq++++p+ ++++ ++ee++ + iee+a +++e + +kkrq PH01003620G0120 92 WMHP---THHPRQSKMLYALTAGHAGHvvhaaHHEPAGYGIIPGTHSTHTLQMMQQPEPQPPPP--PKEECMPPPLIEENAGVINEPPPPKKRQ 180 ****...999******99999999877789999********************77766655555..599************************* PP GAGA_bind 155 rakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248 + ++pk++k kk+kk ++++++ ++++ +r++ +kk++++v+ngv+lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCtttiS+yPLPvst PH01003620G0120 181 QRRQPKSPKLKKPKK-VAAPREDGAPDGPAPRRRGPKKTVGMVINGVDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPVST 273 ***************.67999999999988**************************************************************** PP GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 krrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk+ WAkHGtnkfvtir PH01003620G0120 274 KRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTLWAKHGTNKFVTIR 326 ****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 4.4E-118 | 1 | 326 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 3.6E-192 | 1 | 326 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MDDDGSLGIR NWGFFETSTR NLGLQLMSSV PADRDTKQLL SNGPFLHHQG HQHMPHHPHH 60 HPRDGGVGGG APSGMPTEAP SMPMNFVRND AWMHPTHHPR QSKMLYALTA GHAGHVVHAA 120 HHEPAGYGII PGTHSTHTLQ MMQQPEPQPP PPPKEECMPP PLIEENAGVI NEPPPPKKRQ 180 QRRQPKSPKL KKPKKVAAPR EDGAPDGPAP RRRGPKKTVG MVINGVDLDL SRIPTPVCSC 240 TGAPQQCYRW GAGGWQSACC TTTISTYPLP VSTKRRGARI AGRKMSQGAF KKVLEKLAGE 300 GYNLNNPIDL KTLWAKHGTN KFVTIR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003620G0120 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573749.1 | 1e-162 | barley B recombinant-like protein A | ||||
Swissprot | P0DH88 | 1e-144 | BBRA_ORYSJ; Barley B recombinant-like protein A | ||||
Swissprot | P0DH89 | 1e-144 | BBRB_ORYSJ; Barley B recombinant-like protein B | ||||
TrEMBL | A0A0Q3FA07 | 1e-160 | A0A0Q3FA07_BRADI; Uncharacterized protein | ||||
TrEMBL | I1I324 | 1e-160 | I1I324_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G21390.1 | 1e-161 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 4e-62 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
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