PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003525G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 321aa    MW: 35151.2 Da    PI: 9.2238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003525G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-15172221355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  PH01003525G0030 172 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 221
                      9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.91461135IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-894136IPR016177DNA-binding domain
SMARTSM003800.001698141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-8104136IPR001471AP2/ERF domain
CDDcd000182.10E-23170231No hitNo description
SuperFamilySSF541715.1E-18170230IPR016177DNA-binding domain
PROSITE profilePS5103219.19171229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18171229IPR001471AP2/ERF domain
SMARTSM003802.9E-33171235IPR001471AP2/ERF domain
PfamPF008473.5E-10172221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTNNNNGNNG VTNAAASGWL GFSLSPHMSS SMDDHHHHHH VQQQHHHHGL FFPTVTTAAA  60
AAYGLGGDVV AATNGYYSQL ASMPLKSDGS LCIMEALRRT DQDHHGGYDM EEKAARAYDL  120
AALKYWGPST HINFPLEDYQ EELEEMKNMT RQEYVAHLRR KSSGFSRGAS MYRGVTRHHQ  180
HGRWQARIGR VSGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI TRYDVDKIMA  240
SNTLLPGELA RRKKVDALHA ADSAAAALVQ AGSAADGWKV AAEALARRRA QPQPPRRLVR  300
RCLLCAARPG DRGRGGHGPS *
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003525G0030
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882631e-174BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803955.11e-108AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-101CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0LGN01e-147A0A0E0LGN0_ORYPU; Uncharacterized protein
STRINGOPUNC07G01740.11e-148(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.15e-89AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]