PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003507G0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 31738.3 Da PI: 5.422 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ede+lv +++++G g W + +++ g++R++k+c++rw++yl PH01003507G0040 14 RGAWTAMEDEILVSYINKHGEGKWGSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.7e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el++++++ lG++ W++Ia +++ gRt++++k++w++ PH01003507G0040 67 RGNISDDEEELIIRLHRILGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78999*****************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.784 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.35E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.71E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.252 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.14E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGRKPCCSKE GLNRGAWTAM EDEILVSYIN KHGEGKWGSL PKRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SDDEEELIIR LHRILGNRWS LIAGRLPGRT DNEIKNYWNT TLGKRVQGNT 120 NNSCSNFQAI APSKCGPKLQ DSSDAGGPEA AHRRSPAPDT SPIRTKARRC TRVLIAAPTT 180 TSHGRPPENV VGHDDHAEEM AAAGQQDFAG DYLSIGSIDL DFDGIELSFL SPWRGDAAAL 240 TDGSVVGADG DHQFGVGEAE ADLEELLGLG AGGDDDDGDQ GVPSLGDLDQ LPWL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003507G0040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | D88619 | 1e-121 | D88619.1 Oryza sativa mRNA for OSMYB3, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561552.1 | 1e-104 | transcription repressor MYB6 | ||||
Swissprot | P10290 | 8e-61 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A0Q3HEZ4 | 1e-103 | A0A0Q3HEZ4_BRADI; Uncharacterized protein | ||||
STRING | Sb01g032770.1 | 8e-87 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 3e-62 | MYB family protein |