PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003426G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 158aa    MW: 17074.8 Da    PI: 6.6754
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003426G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.96.8e-11124156335
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 
                      e kr rr+ +NRe+ArrsR+RK a++  Le  v
  PH01003426G0040 124 ETKRIRRMVSNRESARRSRRRKHAQLSDLESQV 156
                      679***************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001704.7E-9124156IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.76124158IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-7126156No hitNo description
SuperFamilySSF579592.93E-7126156No hitNo description
PROSITE patternPS000360129144IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MKKCPSELEL EAFIREDDAD AERKQHGHGA DAGVFSPGGL SGLGFGDSNT MGGSSASRLW  60
WSESVRTPHA AVSTSVESQT ACLSASPRAT TSAKHAPDSE SDSDSESLID VEGVPCERGT  120
KSMETKRIRR MVSNRESARR SRRRKHAQLS DLESQVLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003426G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005580.0FP100558.1 Phyllostachys edulis cDNA clone: bphyem211f06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951741.11e-43bZIP transcription factor RISBZ4 isoform X2
SwissprotQ6H5008e-35RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A3L6RTE41e-43A0A3L6RTE4_PANMI; Basic leucine zipper 9-like isoform X1
STRINGPavir.Db00496.1.p4e-42(Panicum virgatum)
STRINGOPUNC02G10230.11e-41(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5754922
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]