PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003417G0160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 27004.5 Da PI: 8.7837 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.3e-18 | 93 | 147 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +++ LA++l+L rqV vWFqNrRa+ k PH01003417G0160 93 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALARQLNLRSRQVEVWFQNRRARTK 147 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.6 | 4e-39 | 93 | 181 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLE+ F+e+++L+p++Kv+lar+L+l+ rqv+vWFqnrRARtk+kq+E+d+ Lkr++++l++en+rL++e ++Lr + PH01003417G0160 93 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALARQLNLRSRQVEVWFQNRRARTKLKQTEVDCGLLKRCCETLTDENRRLHRELQQLR-A 181 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-18 | 83 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 89 | 149 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-14 | 91 | 153 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 91 | 152 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.6E-15 | 93 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.09E-14 | 93 | 150 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 124 | 147 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.0E-20 | 149 | 192 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.5E-10 | 149 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAQEEVGLAL GLSLGSGRHH RKEQPPSQPC VLEPSLTLRL PADSGLTAPG RPLAAAVKRE 60 LRADDDDDEA AERALYSADS SAAADDDEGC NSRKKLRLTK EQSALLEDRF KEHSTLNPKQ 120 KVALARQLNL RSRQVEVWFQ NRRARTKLKQ TEVDCGLLKR CCETLTDENR RLHRELQQLR 180 ALNHPQPAAG FFMAQLPAAT LSICPSCERL AGQPPPAADR PTKAAGPGRG RAAHFQFSPF 240 TNSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 97 | SRKKLRL |
2 | 141 | 149 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003417G0160 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098984 | 0.0 | FP098984.1 Phyllostachys edulis cDNA clone: bphylf047o12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983488.1 | 1e-114 | homeobox-leucine zipper protein HOX15 | ||||
Swissprot | Q7G737 | 2e-85 | HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15 | ||||
TrEMBL | K4AE82 | 1e-113 | K4AE82_SETIT; Uncharacterized protein | ||||
STRING | Si037189m | 1e-113 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-62 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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