PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003413G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 351aa    MW: 38932.2 Da    PI: 7.3615
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003413G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1054.5e-333589155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWt eLH+rFv+a++qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  PH01003413G0110 35 KPRLRWTVELHDRFVDAITQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 89
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.283292IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-313290IPR009057Homeodomain-like
SuperFamilySSF466892.69E-163491IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-243590IPR006447Myb domain, plants
PfamPF002497.8E-73787IPR001005SANT/Myb domain
PfamPF143794.2E-24129175IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MFHSSKKPGT STVSSNDRPM CVQGDSGLVL TTDPKPRLRW TVELHDRFVD AITQLGGPDK  60
ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQHKEFNDHS VNDAMEMQQN AASSSSMMGR  120
SMNERDRSVH MNEALRMQME VQRRLHEQLE VQKHLQMRTE AQAKYMQSIL EKAYQALASD  180
DCATWPGGYK SLGNQAVLDI GSSMSSPPQD LQLYGGSHLE LQQQMERPMD SFLAFNESCI  240
GSVGKKSPSH YSCIGKSPIV WAGEEQVKIS ADQLQIAPSM MMEAGDIDVM DPIADVYEAK  300
QIMSGDSMGS KGFENPSSKL EMRSSPQRAP VGSERINSPM VGAQARNLSY G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-183591258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-183591258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-183591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-183591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-183591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-183591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-183591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-183591258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003413G0110
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0980260.0FP098026.1 Phyllostachys edulis cDNA clone: bphylf053e04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799290.11e-165myb family transcription factor APL
SwissprotQ9SAK54e-92APL_ARATH; Myb family transcription factor APL
TrEMBLA0A0D9WSZ71e-170A0A0D9WSZ7_9ORYZ; Uncharacterized protein
STRINGLPERR06G19840.11e-170(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.22e-85G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]