PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003190G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 321aa    MW: 35174.7 Da    PI: 6.7786
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003190G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.81.1e-4991331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd+elv++yL++k+ g +l +  vi+e+d+yk++Pw+Lp+k+ ++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v  
  PH01003190G0100   9 LPPGFRFHPTDDELVMCYLCRKCGGLPLAA-PVIAEIDLYKFNPWELPEKAMGGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGL 101
                      79*************************999.89***************8888999*************************************99 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + v +kk Lvfy g+ pkg+kt+W+mheyrl
  PH01003190G0100 102 --PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 133
                      ..778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-606163IPR003441NAC domain
PROSITE profilePS5100557.5149163IPR003441NAC domain
PfamPF023656.9E-2510133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDCGGALQLP PGFRFHPTDD ELVMCYLCRK CGGLPLAAPV IAEIDLYKFN PWELPEKAMG  60
GEKEWYFFSP RDRKYPNGSR PNRAAGTGYW KATGADKPVG LPRPVAIKKA LVFYAGKPPK  120
GVKTNWIMHE YRLADVDRSA AARKKSNNAL RLDDWVLCRI YNKKGVIERY DTVPAGDVKQ  180
AAAAKKPRPG HHAGGAAGTA MKLELSDYGY YPPSPPPTSA TEMLCFDRSG SADRESMPRL  240
HTDSSSSDHV LSPSPDFPSD GDRDLDYAES QPTGGGWPGD DWGVDDGFVI DSSLFEAPSP  300
GVFARDGALF GDMFTYLQKP F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-7521698174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003190G0100
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924080.0FP092408.1 Phyllostachys edulis cDNA clone: bphylf024g16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617286.11e-175NAC domain-containing protein 71
SwissprotQ53NF71e-176NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLA0A0E0MD911e-173A0A0E0MD91_ORYPU; Uncharacterized protein
STRINGOS11T0184900-021e-175(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.14e-97NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]