PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003170G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 512aa    MW: 56643.2 Da    PI: 6.2533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003170G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.7e-29190246259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+vk+s+++rsYYrCt ++C +kkkve++  d++vvei+Y+g+Hnhe
  PH01003170G0110 190 GDGFSWRKYGQKQVKSSDNSRSYYRCTNSSCLAKKKVEHCP-DGRVVEIIYRGTHNHE 246
                      6****************************************.***************8 PP
2WRKY100.41.1e-31358415259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+H+h+
  PH01003170G0110 358 SDGYRWRKYGQKIVKGNPNPRSYYRCTHDGCPVRKHVEKAPDDVNNIVVTYEGKHDHD 415
                      7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-26178248IPR003657WRKY domain
SuperFamilySSF1182901.7E-23182248IPR003657WRKY domain
PROSITE profilePS5081121.735184248IPR003657WRKY domain
SMARTSM007745.5E-31189247IPR003657WRKY domain
PfamPF031062.6E-22191246IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-31351417IPR003657WRKY domain
PROSITE profilePS5081132.742352417IPR003657WRKY domain
SuperFamilySSF1182903.4E-27352417IPR003657WRKY domain
SMARTSM007742.4E-36357416IPR003657WRKY domain
PfamPF031063.0E-25359414IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MADGEPEAAA EVGKHPPPEP PEAEPETEMQ TEAKEREQAE EKATEMEKVE AKEMEIEKKE  60
DAEAEVKVEG KEIEKEKEKV EVEATRRPDP ILAVPCYIAS PGFAGQFAMS HQAALASVTA  120
QAQMQLQSPT SSAYSEGLSS PFPHPITLKA IVPLQQAPSI TQGSVCRPMA EKSSSSESKL  180
HHHVAVNMVG DGFSWRKYGQ KQVKSSDNSR SYYRCTNSSC LAKKKVEHCP DGRVVEIIYR  240
GTHNHEPPQK TRFVKERVPH INVPSRDDET LRLVNTEIIE SRTPTCKLNQ SAVSEISEQK  300
FFCSSDCEGD AGNKSEDEHP SAELQPKRRR VETTAPNLTP VLRTVREQKI IVQAGKLSDG  360
YRWRKYGQKI VKGNPNPRSY YRCTHDGCPV RKHVEKAPDD VNNIVVTYEG KHDHDQPFRG  420
SSDLRDRPVS VITPAAIATE QPNTVTSTSD QKPPTSTQKD ADSESIKSTT IELGEKALES  480
AQTLLSIRTN SDDMKNSLLK DTSAVVPVQN N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-253574171777Probable WRKY transcription factor 4
2lex_A1e-253574171777Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326330KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003170G0110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166589.10.0probable WRKY transcription factor 4
TrEMBLA0A0M5ILA70.0A0A0M5ILA7_WHEAT; WRKY45 transcriptional factor
STRINGBRADI3G19640.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.22e-62WRKY DNA-binding protein 4