PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01003146G0070

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GRAS

Protein Properties

Length: 831aa MW: 91385.9 Da PI: 4.8296

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003146G0070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	348.8	8.6e-107	450	821	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL++cA+ v++gd + a++lL+++++++sp+gd++qRla++f+e+L+ rla+++s++y++l +++ts +e l+a+kl+ ++ + ++s+ PH01003146G0070 450 HTLLIHCAQSVATGDRRSANELLKQIKQHSSPRGDTTQRLAHCFAEGLEVRLAGTGSQVYRSLVAKRTS---AVEFLKAYKLYMAACCFKRVSF 540 679***********************************************************99999...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 ++I++av+g +r+Hi+D+++++G+QWp Ll+ La+R++gpp++R+Tg++ p++g + ++eetg+rL++ A+e+gvpf+f+ +a ++e PH01003146G0070 541 TFSIKTIYNAVAGRSRLHIVDYGVQYGFQWPGLLRLLAAREGGPPEVRLTGIDLPQPGfrPAFQIEETGRRLSNCAREFGVPFKFHN-IAAKWE 633 *****************************************************999***********************.799* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +++ e+L+++p+E+l+Vn + l +l+desv l+s +rd vL+ +++++P+v++ + + ++++ F++rf eal +ysalfd+l+a++pre PH01003146G0070 634 TIRAEDLNIDPDEVLVVNNQCGLNNLMDESVVLDSpsPRDVVLSNIRKMRPNVFIQCVVNGTYGAPFFVTRFREALFFYSALFDMLDATIPREC 727 ****************************99988889**************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +er +Er llgr + nv+acega+r+ r et+++W+ r ++aG+++++l+ ++++ a+ +++++ + + ++ ++ +l++gWk+r L+++S W PH01003146G0070 728 DERLLIERDLLGRCALNVIACEGADRVDRPETYKQWQVRNHRAGLRQLQLNPEVVQVARNKVKNHYHKDFVIDVDHRWLLQGWKGRVLYATSTW 821 **************************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.93	423	802	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-104	450	821	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 831 aa Download sequence Send to blast
MTATPEEFLR EGFLVDPEPL SPSLFLDLPP TPHSHADGED PVNSDDLVLP YISRMLMEED 60 IDDKFFYQYP DQPALLTAQQ PYAQILADTT SSSDSATNNT TNSGNSIGLS PSPDAPAPAN 120 PTWPYDPIEL SRLLQSPPYL DMRIGLADTT TNSGNSTGLS PSSSSPDAPA SANPTWPYDP 180 IELSQLLQSP PYLDMRIGLA DDVDNLFLPG DVAPSAGFQQ SPALDKGAAD DGNPSFAGAG 240 QNGGTTGIQS SALLNDTDEQ EVEAKTIISL PDGDSDQGAL ASAFFNGQTG SNMDMLNLAF 300 LKGMEEANKF LPTNNNLLID LEATSEKFLP RDSKPVSGFT AGRVKEEVVD GMPMFGGGTG 360 NGRGRKNRHD GDDLEAETGR NSKLLMPELE ETGAREMFDE IMLRGYEICM KGMEDLRIAM 420 GSEAEKKIRK GTVKAAARGS RGVSKVVDLH TLLIHCAQSV ATGDRRSANE LLKQIKQHSS 480 PRGDTTQRLA HCFAEGLEVR LAGTGSQVYR SLVAKRTSAV EFLKAYKLYM AACCFKRVSF 540 TFSIKTIYNA VAGRSRLHIV DYGVQYGFQW PGLLRLLAAR EGGPPEVRLT GIDLPQPGFR 600 PAFQIEETGR RLSNCAREFG VPFKFHNIAA KWETIRAEDL NIDPDEVLVV NNQCGLNNLM 660 DESVVLDSPS PRDVVLSNIR KMRPNVFIQC VVNGTYGAPF FVTRFREALF FYSALFDMLD 720 ATIPRECDER LLIERDLLGR CALNVIACEG ADRVDRPETY KQWQVRNHRA GLRQLQLNPE 780 VVQVARNKVK NHYHKDFVID VDHRWLLQGW KGRVLYATST WVADDNKSVF *

Sequence ? help Back to Top

Protein Sequence Length: 831 aa Download sequence Send to blast

MTATPEEFLR EGFLVDPEPL SPSLFLDLPP TPHSHADGED PVNSDDLVLP YISRMLMEED  60
IDDKFFYQYP DQPALLTAQQ PYAQILADTT SSSDSATNNT TNSGNSIGLS PSPDAPAPAN  120
PTWPYDPIEL SRLLQSPPYL DMRIGLADTT TNSGNSTGLS PSSSSPDAPA SANPTWPYDP  180
IELSQLLQSP PYLDMRIGLA DDVDNLFLPG DVAPSAGFQQ SPALDKGAAD DGNPSFAGAG  240
QNGGTTGIQS SALLNDTDEQ EVEAKTIISL PDGDSDQGAL ASAFFNGQTG SNMDMLNLAF  300
LKGMEEANKF LPTNNNLLID LEATSEKFLP RDSKPVSGFT AGRVKEEVVD GMPMFGGGTG  360
NGRGRKNRHD GDDLEAETGR NSKLLMPELE ETGAREMFDE IMLRGYEICM KGMEDLRIAM  420
GSEAEKKIRK GTVKAAARGS RGVSKVVDLH TLLIHCAQSV ATGDRRSANE LLKQIKQHSS  480
PRGDTTQRLA HCFAEGLEVR LAGTGSQVYR SLVAKRTSAV EFLKAYKLYM AACCFKRVSF  540
TFSIKTIYNA VAGRSRLHIV DYGVQYGFQW PGLLRLLAAR EGGPPEVRLT GIDLPQPGFR  600
PAFQIEETGR RLSNCAREFG VPFKFHNIAA KWETIRAEDL NIDPDEVLVV NNQCGLNNLM  660
DESVVLDSPS PRDVVLSNIR KMRPNVFIQC VVNGTYGAPF FVTRFREALF FYSALFDMLD  720
ATIPRECDER LLIERDLLGR CALNVIACEG ADRVDRPETY KQWQVRNHRA GLRQLQLNPE  780
VVQVARNKVK NHYHKDFVID VDHRWLLQGW KGRVLYATST WVADDNKSVF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-42	455	821	25	378	Protein SCARECROW
5b3h_A	2e-42	455	821	24	377	Protein SCARECROW
5b3h_D	2e-42	455	821	24	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01003146G0070

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564369.1	0.0	scarecrow-like protein 34
TrEMBL	I1HSE9	0.0	I1HSE9_BRADI; Uncharacterized protein
STRING	BRADI2G52227.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-150	SCARECROW-like 14