PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003139G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 547aa    MW: 58765.1 Da    PI: 7.5737
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003139G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57339.81.3e-12219307797
           DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                      w  eDei +L +l+   +++g+ p    d+++  v +s++ k  s+s++ eK+rrLK+++ +  kk++s       k++d  +++ls+ +Wg
  PH01003139G0080 219 WKTEDEIKILEALVAHVKSQGVYP--KPDDLIAAVGDSLDRKnCSRSEMYEKVRRLKQRYGTTAKKVASTGA-LPGKDDDLRMYKLSEAVWG 307
                      9***************99999655..5569999*****9865389********************9544433.45688899**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.4E-18219307IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MARKRRAPSP PPPPQEDSSE ESSSGEEEEA AGGTPAHQKP PQNPKPPSAA AANDDDTGSS  60
EGGEEEKEAE ESSDSEVDAQ AFQLRQVARS PSKPPVPAFK PESDADEEEE QGESSDSEPD  120
NLEPVQKAAA KKPKAETEKK RLAPEPTLSG KAKKAKKAKV ERVAPEPTPS GKAKKTKAGA  180
EKAAPEPTPS GKAKKPRAEL EKVAPDSLPS SKSEKPARWK TEDEIKILEA LVAHVKSQGV  240
YPKPDDLIAA VGDSLDRKNC SRSEMYEKVR RLKQRYGTTA KKVASTGALP GKDDDLRMYK  300
LSEAVWGENA KEVASASTSQ NNGALSKSKK GQTTANENGA TLTGSKRGKA TKEEIDEDTK  360
NKSLKEATST ATPAKSKKQG NHKDELDEDA KSGTSKETTT TATQNGGTLI RSKRGETHKE  420
RMDGDAESVM PKEATTATQN GGTPTQSKKG EAQKEEKDRY ANVQGIHRGF DELQSLYPNL  480
ASYVERIEAQ HPCGETLKRA FECIGDGKAC ALESKIKKQN VAEVKMQIHR ADTKKEVTNI  540
LIGLLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003139G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824313.11e-145recombination repair protein 1-like
TrEMBLA0A0A9QY261e-161A0A0A9QY26_ARUDO; Uncharacterized protein
STRINGPavir.Ab01142.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.17e-07DNA-binding storekeeper protein-related transcriptional regulator