PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003138G0210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 266aa MW: 29150.9 Da PI: 9.1371 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121.3 | 9e-38 | 5 | 121 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +ppGfrFhP+d+ + +g +i +vd +k+ePwdLp+++ + kewyfFs rd+ky+tg+r+nr+t+sgyWkatgkd+ PH01003138G0210 5 MPPGFRFHPRDDAG-------RRSGGVYGG-VAIVDVDFNKCEPWDLPEAACVGGKEWYFFSLRDRKYTTGHRTNRSTRSGYWKATGKDRGA-- 88 79*********852.......333333333.46***************7666789*********************************9986.. PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg++ktLvf++grapkg+kt+Wvmhe+r+ PH01003138G0210 89 -GGAAVGMRKTLVFHQGRAPKGSKTEWVMHEFRM 121 .6799***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.978 | 1 | 148 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-47 | 3 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-17 | 6 | 121 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MEARMPPGFR FHPRDDAGRR SGGVYGGVAI VDVDFNKCEP WDLPEAACVG GKEWYFFSLR 60 DRKYTTGHRT NRSTRSGYWK ATGKDRGAGG AAVGMRKTLV FHQGRAPKGS KTEWVMHEFR 120 MEGHQPHLAA ARHPHLKEDW VLCRVFYKSR TTTPGPSAEG AGTLSNELDL TAAPPLAPLI 180 DTYIPFDGNP MTAVGSYEQV SCFSGLPALP FNGSVSFGDL LALETSEKKA NRTVLSSMSS 240 NSTSKLELPP NWSKENGLSQ MWNPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-42 | 2 | 149 | 12 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003138G0210 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM037184 | 2e-83 | HM037184.1 Triticum aestivum NAC transcription factor (NAC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158480.1 | 1e-127 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 2e-68 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A287WUX0 | 1e-127 | A0A287WUX0_HORVV; Uncharacterized protein | ||||
STRING | EMT14807 | 1e-126 | (Aegilops tauschii) | ||||
STRING | Traes_7DL_BDD45DB24.2 | 1e-126 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 3e-66 | NAC domain containing protein 1 |