PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003107G0070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 26271 Da PI: 4.9944 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.5e-17 | 67 | 115 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g PH01003107G0070 67 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 115 9****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.3E-12 | 65 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-20 | 66 | 124 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.8 | 66 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-31 | 66 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-33 | 66 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 67 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.68E-29 | 67 | 125 | No hit | No description |
PRINTS | PR00367 | 3.1E-9 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MATSEQCSES SSTTTSSYTS YSSPSTSSCS RASPSADAGG KKQHGKRKRA RDDAGGADAE 60 AAAPPAYRGV RMRAWGKWVS EIREPRKKSR IWLGTFPCPE MAARAHDVAA LSIKGARAVL 120 NFPDLAPVLP RPASLSPRDV QAAAARAAIM QHHVSASTYS PAAPASVDST APADDQSAAR 180 DEPEPEPSRE NEQQQPAQVE VAELVFDELA PLWVEDVAEF GPSDHCWTAY DGLDTVGFQP 240 LLWEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-16 | 56 | 123 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003107G0070 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ353852 | 1e-100 | DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds. | |||
GenBank | GU785008 | 1e-100 | GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds. | |||
GenBank | HG670306 | 1e-100 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968548.2 | 3e-85 | ethylene-responsive transcription factor ERF034 | ||||
Refseq | XP_015644400.1 | 7e-86 | ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A0E0JFA0 | 1e-93 | A0A0E0JFA0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G06210.1 | 2e-94 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 1e-41 | ERF family protein |