PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003093G0130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 294aa    MW: 32415.3 Da    PI: 6.5101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003093G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WTteEd++l+  +   G  +W+++++  g+ R++k+c++rw +yl
  PH01003093G0130 14 RGPWTTEEDKKLISFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     89******************************99************97 PP

2Myb_DNA-binding44.34.1e-1470125447
                      S-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqky 47 
                       T  E++  +d++++lG+              +W++Ia++++ gRt++++k++w+++
  PH01003093G0130  70 LTDAEEQVVIDLHAKLGNSntirvldsklwrgRWSKIAAKLP-GRTDNEIKNHWNTH 125
                      5899*************99***********************.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-20562IPR009057Homeodomain-like
PROSITE profilePS5129412.148961IPR017930Myb domain
SMARTSM007179.9E-121363IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-221465IPR009057Homeodomain-like
PfamPF002491.7E-141461IPR001005SANT/Myb domain
CDDcd001677.22E-91661No hitNo description
PROSITE profilePS5129420.70762130IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2163131IPR009057Homeodomain-like
SMARTSM007172.2E-1066128IPR001005SANT/Myb domain
PfamPF002491.6E-1170125IPR001005SANT/Myb domain
CDDcd001671.94E-971126No hitNo description
SuperFamilySSF466891.15E-2299127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRQPCCDKL GVKRGPWTTE EDKKLISFIL TNGHCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL TDAEEQVVID LHAKLGNSNT IRVLDSKLWR GRWSKIAAKL PGRTDNEIKN  120
HWNTHIKKKL IKMGIDPVTH EPLDRKQQPE ASPATTSQST VTTESKSDET TRQQRPQLDD  180
VRDGSAGDSS PPESSTNTAC TTGGSSSSSH YQVDPLVKWL LEEDLPTGDE PWLNFTVGND  240
VNEFSSIAAA APELPPWDVG ATNWLLDYQD FGIGDSSLLV DASMVNSSNG SNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24141307108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003093G0130
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050921e-122AP005092.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1112_E07.
GenBankAP0053141e-122AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01.
GenBankAP0149651e-122AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-122CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660886.11e-160PREDICTED: protein ODORANT1-like
SwissprotQ50EX61e-92ODO1_PETHY; Protein ODORANT1
TrEMBLJ3MZH81e-159J3MZH8_ORYBR; Uncharacterized protein
STRINGOB09G24070.11e-160(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.12e-84myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]