PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01003084G0080

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 366aa MW: 41975.1 Da PI: 6.8258

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003084G0080	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.7	4.6e-53	22	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhP+deelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ + ++e++ewy Fs++dkky+tg+r+nrat++g+Wkatg PH01003084G0080 22 VPPGFRFHPSDEELVDYYLRKKVASRRIDL-NVIKDVDLYKMEPWDLQErcriglsESESEQEEWYLFSHKDKKYPTGSRTNRATAAGFWKATG 114 69**************************.99**********9557888766666888*************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk++++k + +lvg++ktLv+y+grap+g+k+dW+mheyrl PH01003084G0080 115 RDKPIYAKrSLALVGMRKTLVYYQGRAPNGHKSDWIMHEYRL 156 ***845567*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-56	10	193	IPR003441	NAC domain
PROSITE profile	PS51005	57.676	22	193	IPR003441	NAC domain
Pfam	PF02365	1.0E-26	23	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MGTYVGMSMS MSMSSTQGIA EVPPGFRFHP SDEELVDYYL RKKVASRRID LNVIKDVDLY 60 KMEPWDLQER CRIGLSESES EQEEWYLFSH KDKKYPTGSR TNRATAAGFW KATGRDKPIY 120 AKRSLALVGM RKTLVYYQGR APNGHKSDWI MHEYRLQTTQ NAPPQASACP TYLSSTTNQS 180 LEEGWVVCRV FKKRLPTTRR DSDQDAPCWY VDEDGPFMHH LNSPMSGMPP HHSMPLQEEQ 240 HLQMLSNTYK RELRLQFQMP NHHVLNTIPH ELESPSFHSR LVSPDHQINV HHAHHHVQLI 300 EHAVDHVTTD WRVLDKFVAS QLSHDATKGV DCTDEGDILQ VNEKQEAATD YASTSTSSSQ 360 VDPWK*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MGTYVGMSMS MSMSSTQGIA EVPPGFRFHP SDEELVDYYL RKKVASRRID LNVIKDVDLY  60
KMEPWDLQER CRIGLSESES EQEEWYLFSH KDKKYPTGSR TNRATAAGFW KATGRDKPIY  120
AKRSLALVGM RKTLVYYQGR APNGHKSDWI MHEYRLQTTQ NAPPQASACP TYLSSTTNQS  180
LEEGWVVCRV FKKRLPTTRR DSDQDAPCWY VDEDGPFMHH LNSPMSGMPP HHSMPLQEEQ  240
HLQMLSNTYK RELRLQFQMP NHHVLNTIPH ELESPSFHSR LVSPDHQINV HHAHHHVQLI  300
EHAVDHVTTD WRVLDKFVAS QLSHDATKGV DCTDEGDILQ VNEKQEAATD YASTSTSSSQ  360
VDPWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-48	22	194	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01003084G0080

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810695.1	0.0	NAC domain-containing protein 105-like
Swissprot	F4HYV5	2e-96	NAC26_ARATH; NAC domain-containing protein 26
TrEMBL	A0A2T7E425	0.0	A0A2T7E425_9POAL; Uncharacterized protein
STRING	Pavir.Da02426.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12102	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	8e-94	Arabidopsis NAC domain containing protein 26

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]