PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003083G0160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 26656.6 Da PI: 4.985 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.4e-12 | 156 | 204 | 6 | 55 |
AP2 6 VrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 +r++k +g+W A+I g r k ++lg+f t+ eAa+a++ a+ +l+g PH01003083G0160 156 IRRRK-DGKWQARIGKI---GeSRdtKDIYLGTFETEVEAAEAYDLAAIELRG 204 78777.9******9885...332236**********99*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.848 | 53 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0027 | 84 | 139 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-5 | 102 | 134 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.186 | 151 | 212 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-5 | 153 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-16 | 156 | 212 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-20 | 156 | 218 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.27E-17 | 156 | 214 | No hit | No description |
Pfam | PF00847 | 3.7E-8 | 157 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-14 | 157 | 214 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.5E-5 | 194 | 214 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MATVHPHSSE SDPTTPPPPP PPSQEKEEQQ QQHDAPEVGA DAEGGGEIAA LDKQLAVGEE 60 SKAAGGGKLV AEAMRKYAAP RSSRFHGVTR WAGKTNPRAG GGSNVTEENA ARAHDLAALK 120 YWGTGPNTKL NFNLSEYEKE IEIMKTMSQD EFVAYIRRRK DGKWQARIGK IGESRDTKDI 180 YLGTFETEVE AAEAYDLAAI ELRGVHAVTN FDINNYCEDG LKKLEGSSEM AKLEGQPETM 240 KLAGQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003083G0160 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT008926 | 5e-72 | BT008926.1 Triticum aestivum clone wde1f.pk001.h1:fis, full insert mRNA sequence. | |||
GenBank | BT009546 | 5e-72 | BT009546.1 Triticum aestivum clone wr1.pk148.f7:fis, full insert mRNA sequence. | |||
GenBank | DQ286570 | 5e-72 | DQ286570.1 Triticum aestivum aintegumenta-like protein (ANTL1B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977550.1 | 1e-104 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-36 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | K3Y955 | 1e-103 | K3Y955_SETIT; Uncharacterized protein | ||||
STRING | Si010747m | 1e-104 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7864 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-38 | AP2 family protein |
Publications ? help Back to Top | |||
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