PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003023G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25487.6 Da PI: 7.1944 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.5e-19 | 72 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g PH01003023G0010 72 TQYRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFVTAEAAARAYDRAARRIRG 122 58********.**********843...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.13E-15 | 72 | 105 | No hit | No description |
Pfam | PF00847 | 3.5E-12 | 73 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-35 | 73 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 73 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-21 | 73 | 130 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.986 | 73 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MCGGAIISDL MPPSSHGSGK RSLCAADLWP QVPAAAGQTH ELEFTVHDTR TGKEAATATD 60 EPARKQRGER RTQYRGIRRR PWGKWAAEIR DPAKGARVWL GTFVTAEAAA RAYDRAARRI 120 RGTKAKVNFS NEDTPPTDYY HGHYASPSFY SAVAAPMALA SPREQVMIEY YDAVDMGMGF 180 FQPPPYAAVD CAGASAVVPV STTPPDHMQV VYGQHQEVGA QLWSFDDITD MPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 73 | 129 | 5 | 62 | ATERF1 |
3gcc_A | 2e-21 | 73 | 129 | 5 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 80 | RKQRGERRTQYRGIRRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003023G0010 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093442 | 8e-74 | FP093442.1 Phyllostachys edulis cDNA clone: bphyem206a20, full insert sequence. | |||
GenBank | FP096836 | 8e-74 | FP096836.1 Phyllostachys edulis cDNA clone: bphyem109m14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018824793.1 | 5e-42 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
Swissprot | P42736 | 9e-36 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A2I4EZG8 | 1e-40 | A0A2I4EZG8_JUGRE; ethylene-responsive transcription factor 1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16919 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-29 | ethylene-responsive element binding protein |