PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002998G0240
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 426aa    MW: 46721.7 Da    PI: 4.3697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002998G0240genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.24.6e-5161341129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd el v+yLk+k+ gk+l++ ++i+e+d+yk+ PwdLp+  ++++++ ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v
  PH01002998G0240   6 LPPGFRFHPTDVELTVYYLKRKLLGKQLRC-NAISEIDLYKFAPWDLPEkaSLQSKDLEWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 98 
                      79****************************.89**************95235566677************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  PH01002998G0240  99 VY-NSRTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134
                      **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-613156IPR003441NAC domain
PROSITE profilePS5100556.7226156IPR003441NAC domain
PfamPF023652.5E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KQLRCNAISE IDLYKFAPWD LPEKASLQSK  60
DLEWYFFCPR DRKYSSGSRT NRSTEAGYWK ATGKDRPVVY NSRTVGMKRT LVFHLGKPPR  120
GDRTDWVMYE YRLEDKELSA SGVKLDACVL CKIFKKSGPG PKIGEQYGAP FNEEEWNDAN  180
GELPSFAPSV PPCAPESSHG GLNSAGQHLA VSDDGEVSFG PLSETDGEHA VNCVRPDRTS  240
SPDIPFDSIH IQQLAEIISS FSTNFLSTVC QDSPLPDSTA GYGNDNEVSA DDSEAIFNEL  300
DEVAPQSVES ISNLCDSCGE HLIQPVLEAL ETEQYLELND LSFSLADDPD PCSLLLSNDL  360
SDHHPLDLEP SLLLSNDLSD HHPLDLEPRF EQASTNDICN TANGTTSTAA ASSACSVPTI  420
HDHVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-53215711169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002998G0240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823524.10.0NAC domain-containing protein 82-like
RefseqXP_025823525.10.0NAC domain-containing protein 82-like
RefseqXP_025823526.10.0NAC domain-containing protein 82-like
RefseqXP_025823527.10.0NAC domain-containing protein 82-like
TrEMBLA2XZC10.0A2XZC1_ORYSI; Uncharacterized protein
STRINGOPUNC04G28460.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148561721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.42e-82NAC domain containing protein 82