PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002987G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 287aa    MW: 31912.7 Da    PI: 6.3586
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002987G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-162370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+ +++ +G g+W+  ar  g++Rt+k+c++rw++yl
  PH01002987G0150 23 KGPWTVEEDALLAGYIEAHGEGRWNELARAAGLRRTGKSCRLRWLNYL 70
                     79********************************************97 PP
2Myb_DNA-binding50.54.9e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T++E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  PH01002987G0150  76 RGDFTPQEQLLILELHFRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 119
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.221870IPR017930Myb domain
SuperFamilySSF466891.42E-3021117IPR009057Homeodomain-like
SMARTSM007171.1E-132272IPR001005SANT/Myb domain
PfamPF002495.7E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-222477IPR009057Homeodomain-like
CDDcd001671.70E-92570No hitNo description
PROSITE profilePS5129422.17471125IPR017930Myb domain
SMARTSM007173.5E-1475123IPR001005SANT/Myb domain
PfamPF002492.8E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2378124IPR009057Homeodomain-like
CDDcd001676.13E-1079119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDATWMGPCG WAAASEDEGG LRKGPWTVEE DALLAGYIEA HGEGRWNELA RAAGLRRTGK  60
SCRLRWLNYL RPDVRRGDFT PQEQLLILEL HFRWGNRWSK IAQQLPGRTD NEIKNYWRTR  120
VQKHAKQLKC DVNTKQFQDI MRHLWMPRLV ERIQAAAAAA ATTEAASASS QHAASMSVVP  180
SKSLVGRSDM CGSPDTKTTR SSTAESSSTS VSFGAQFPSN QVVVASEKCG SANARCSDDM  240
FDGSWSDLLA RACDDSADSF VLPNFELGEC GDNWWSLEDI WLQQQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-252112325126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002987G0150
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924980.0FP092498.1 Phyllostachys edulis cDNA clone: bphyem114b06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193528.11e-127transcription factor MYB108-like
SwissprotQ10MB42e-85MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A446QAB81e-134A0A446QAB8_TRITD; Uncharacterized protein
STRINGTraes_3B_AA6863F0D.11e-133(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.18e-79myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]