PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002928G0170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 29460.3 Da PI: 7.8562 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +lv ++++G +W++ ++ g+ R++k+c++rw +yl PH01002928G0170 14 RGPWTAEEDRILVAHIERHGHSNWRALPKQAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.456 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.38E-22 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.94E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 6.644 | 62 | 126 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-13 | 65 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7 | 66 | 128 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGRAPCCEKM GLKRGPWTAE EDRILVAHIE RHGHSNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF NREEEDAIIH LHDLLGNSKN YLVLVFWTRG FLKSWLRHWL PGRTDNEIKN 120 VWHTDLKKRL EPKPSGQAQG KTSAPKRKTK KPEAVSALDG LTTVPVSPEQ SLSTSATTDY 180 SMASSLDNTD NFTSEEELQI DDSFWFETLA MTVDSSCSRM QSGDLFGADS ASPPSSGNDD 240 MDFWLRLFMQ AGDMKCLSQI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-17 | 12 | 130 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002928G0170 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM071921 | 1e-104 | HM071921.1 Leymus racemosus Myb3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169007.1 | 1e-118 | myb-related protein Myb4-like | ||||
Swissprot | Q6K1S6 | 1e-107 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | A0A3B6PM53 | 1e-119 | A0A3B6PM53_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446WER0 | 1e-119 | A0A446WER0_TRITD; Uncharacterized protein | ||||
STRING | MLOC_43806.1 | 1e-119 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-69 | myb domain protein 14 |
Publications ? help Back to Top | |||
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