PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002901G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 353aa    MW: 37844.3 Da    PI: 6.2718
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002901G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.2e-32227282156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH++Fv a++qLGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  PH01002901G0070 227 KARRCWSPELHRQFVAALQQLGGPQVATPKQIRELMEVDGLTNDEVKSHLQKYRLH 282
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.453224284IPR017930Myb domain
SuperFamilySSF466893.11E-17225285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-29225285IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-26227282IPR006447Myb domain, plants
PfamPF002494.2E-7229280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGLDVAEIGV GTDLSLDLKM FAARSVGRVK DAPASAMDDC IRRLEDERGK IEVFRRELPL  60
CARLLADVID VMKEEAEKKK GDRGEEEDGA GDKSKWMSTA QLWTGNSGRD DADSEKQDKE  120
RSSSEVKVNS HGGGAFMPFK AVGSGAPAFA PPCFRKDDKA YDVGMPDLSL LSPAPTKSTP  180
SAATGAADES RRQVVGFAQA AARAAAMAPS GPNHNLQTES QQQQARKARR CWSPELHRQF  240
VAALQQLGGP QVATPKQIRE LMEVDGLTND EVKSHLQKYR LHNRRAPSSA VVSQPILVGN  300
PAGLWIPPEQ SCSQSGSPQG PLHFSTSGIA VSSAATVSCE EEDGRSESYG WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-14227280154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-14227280154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-14227280154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-14227280154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002901G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804519.11e-164transcription factor NIGTH1-like
TrEMBLA0A0A9H2111e-169A0A0A9H211_ARUDO; Uncharacterized protein
STRINGPavir.Ba02240.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.18e-44G2-like family protein