PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002896G0090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | E2F/DP | ||||||||
Protein Properties | Length: 240aa MW: 26945.2 Da PI: 10.4096 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 50.3 | 3.9e-16 | 82 | 140 | 6 | 71 |
E2F_TDP 6 Lrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 Lr + + ++++ +k+e+ g++t+ne d+kn+rRR+YD++NVL a+++i+k ek+ei+w+g PH01002896G0090 82 LREMYNAVISVSKKVEAkGRTTYNE----F---DEKNIRRRVYDAFNVLIAIGVIAK-EKKEIKWMG 140 6777778888888888888888886....5...8899********************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.0E-20 | 61 | 145 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.7E-12 | 83 | 140 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 7.2E-13 | 92 | 140 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.03E-11 | 101 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF144074 | 3.14E-13 | 147 | 209 | No hit | No description |
SMART | SM01138 | 0.0062 | 147 | 233 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 1.2E-8 | 148 | 209 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MAPPCGDAAA AASAAPDLTG LRICESSRLP PLPARGGGNA AEREEKGDKN KKGKKEKAGS 60 QRITGWGLRE YSKIAWVLMA LLREMYNAVI SVSKKVEAKG RTTYNEFDEK NIRRRVYDAF 120 NVLIAIGVIA KEKKEIKWMG LSNYRYEKIK KLEEVRKDLI NRIKNKNRLL QEIEKQFDDL 180 QNIKLRNQAL QRPAESANGI RLPFLLVKSL ATKLSHLDVP MENSIGEISP VTGGYRCYR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 9e-15 | 43 | 141 | 1 | 89 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002896G0090 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY224529 | 4e-91 | AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631692.1 | 3e-90 | transcription factor-like protein DPB isoform X2 | ||||
TrEMBL | A0A3L6R0L2 | 6e-95 | A0A3L6R0L2_PANMI; Transcription factor-like protein DPB | ||||
STRING | OPUNC01G26430.1 | 1e-94 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 3e-29 | Transcription factor DP |