PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002806G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 841aa    MW: 93009.1 Da    PI: 7.3866
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002806G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.6e-23134235199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++a+e+       +  ++ +++l+ +d++g +W +++i+r++++r++l++GW+ Fv+a++L +gD ++F   + 
  PH01002806G0200 134 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--HPPTQELVAKDLHGVEWPFRHIFRGQPRRHLLQSGWSVFVSAKHLVAGDAFIFL--RG 223
                      99*****************************544..455569************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+v+r+
  PH01002806G0200 224 ENGELRVGVRRA 235
                      9999*****996 PP
2Auxin_resp110.61.6e-36260342183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+haa+t+++F+v+Y+Pr+s++eFvv+++++ ++lk++ s+GmRfkm+fe+e++ e+r++Gt+vg+ d+dp+ W +SkWrsLk
  PH01002806G0200 260 AWHAANTGTMFTVYYKPRTSPAEFVVPRDRFDESLKRNHSIGMRFKMRFEGEEAGEQRFTGTIVGIGDSDPSGWVDSKWRSLK 342
                      89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-41127249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-40130263IPR015300DNA-binding pseudobarrel domain
CDDcd100174.80E-22132234No hitNo description
PROSITE profilePS5086311.744134236IPR003340B3 DNA binding domain
PfamPF023621.1E-21134235IPR003340B3 DNA binding domain
SMARTSM010191.6E-23134236IPR003340B3 DNA binding domain
PfamPF065072.2E-33260342IPR010525Auxin response factor
PfamPF023092.7E-11686793IPR033389AUX/IAA domain
PROSITE profilePS5174523.273714798IPR000270PB1 domain
SuperFamilySSF542771.62E-11717790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAAAGPAGGG EGGVIGGGVD GLFVELWKAC AGPLAAVPAV GERVFYFPQG HIEQVEASTN  60
QVAEQQGTPL YNLPWKILCK VMNVELKAEQ DTDEVYAQLT LLPEKKQDEN VSKEEEVVPD  120
APPAVAERTR VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSQHPP TQELVAKDLH  180
GVEWPFRHIF RGQPRRHLLQ SGWSVFVSAK HLVAGDAFIF LRGENGELRV GVRRAMRQQA  240
NIPSSVISSH SMHLGVLATA WHAANTGTMF TVYYKPRTSP AEFVVPRDRF DESLKRNHSI  300
GMRFKMRFEG EEAGEQRFTG TIVGIGDSDP SGWVDSKWRS LKVRWDEASS VPRPERVSPW  360
QIEPAVSPPP VNPLPAPRIK RPRPNVIASL PNLSAVHKEV ASKVVTNSQQ NGLPRAFHSQ  420
ESTTLKSRFG DNNDLKISQK LTMWSSGIDQ EKNNIAAQRK LSSEGCMQMR RPEGYNKMLS  480
AFQPLKDVQN PLCSFPSQIS GNRSNTWNTI NVHYPDQEVN HNIFPGTWSF MPPNTGFGMN  540
QHNYRMMPDI ALPQRAEKAK FIGNGAFTSL QAHGIDQRSS GWLGHIEPSS HIDDASSSLI  600
KPQPLVIGHD IQKTKGSSCM LFGIHLNSPA KSEPLISPPS VAYDGKPQIP RSAKGPELEV  660
IEVDKSSEVD KSSDPSKIVK PLDGTRSDSV TEKHQSCPEA TRNIQSKLQN GSTRSCKKVH  720
KQGIALGRSV DLTRFTCYDE LITELDQMFD FNGELNRSCK NWMVVYTDNE GDMMLVGDDP  780
WNEFCNIVHK IFIYTREKVQ KMNPGALVSR PEDSLSLERG LADKDLRGGL PASSLNSEDC  840
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17313641354Auxin response factor 1
4ldw_A1e-17313641354Auxin response factor 1
4ldw_B1e-17313641354Auxin response factor 1
4ldx_A1e-17313641354Auxin response factor 1
4ldx_B1e-17313641354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379383KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002806G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0138020.0DQ013802.1 Phyllostachys praecox ARF1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620411.10.0auxin response factor 24 isoform X1
RefseqXP_015620412.10.0auxin response factor 24 isoform X1
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLI1R6D50.0I1R6D5_ORYGL; Auxin response factor
STRINGORGLA12G0109100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]