PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002777G0100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 269aa    MW: 29608.9 Da    PI: 8.6204
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002777G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.41.3e-40141442128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +pGfrF Pt++el+ +yL++++++++ ++e+vi+ v++y ++P+dL++   +++  ++++++fF++r++++ +g r+ r+t sgyWkatg+   
  PH01002777G0100  14 TPGFRFYPTEKELLGFYLRHRLANTRPQIERVIPVVNVYCHHPSDLRSmagAASVrDTEQLFFFCPRSEREVHGGRPVRTTPSGYWKATGSPSC 107
                      69***************************99***************843442222244588********************************* PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+s+ ++++g+k+t+vfy+grap+g+kt+W m+ey++
  PH01002777G0100 108 VFSSANKVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 144
                      ***********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-4512166IPR003441NAC domain
PROSITE profilePS5100543.63313167IPR003441NAC domain
PfamPF023656.5E-2115143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MASSSSGSSS DPFTPGFRFY PTEKELLGFY LRHRLANTRP QIERVIPVVN VYCHHPSDLR  60
SMAGAASVRD TEQLFFFCPR SEREVHGGRP VRTTPSGYWK ATGSPSCVFS SANKVIGVKR  120
TMVFYQGRAP TGTKTRWKMN EYKAVADAAV APLRLRNEFS VCRVYISTGT LRSFDRRPLN  180
QPGHDQAAHR HVPSSARADF TNLADDVING TGQPENSHDS SSSGSRGIVD VDGSDDATID  240
WNSLITTAET ASFNDIDFNS SIIGAWPQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-2681657163NO APICAL MERISTEM PROTEIN
1ut4_B4e-2681657163NO APICAL MERISTEM PROTEIN
1ut7_A4e-2681657163NO APICAL MERISTEM PROTEIN
1ut7_B4e-2681657163NO APICAL MERISTEM PROTEIN
3swm_A5e-26816510166NAC domain-containing protein 19
3swm_B5e-26816510166NAC domain-containing protein 19
3swm_C5e-26816510166NAC domain-containing protein 19
3swm_D5e-26816510166NAC domain-containing protein 19
3swp_A5e-26816510166NAC domain-containing protein 19
3swp_B5e-26816510166NAC domain-containing protein 19
3swp_C5e-26816510166NAC domain-containing protein 19
3swp_D5e-26816510166NAC domain-containing protein 19
4dul_A4e-2681657163NAC domain-containing protein 19
4dul_B4e-2681657163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002777G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0942450.0FP094245.1 Phyllostachys edulis cDNA clone: bphylf035k07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662743.11e-108PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR31e-65NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0E0BFG71e-111A0A0E0BFG7_9ORYZ; Uncharacterized protein
STRINGOGLUM11G03170.11e-111(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.25e-68NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]