PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002777G0100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 269aa MW: 29608.9 Da PI: 8.6204 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.4 | 1.3e-40 | 14 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrF Pt++el+ +yL++++++++ ++e+vi+ v++y ++P+dL++ +++ ++++++fF++r++++ +g r+ r+t sgyWkatg+ PH01002777G0100 14 TPGFRFYPTEKELLGFYLRHRLANTRPQIERVIPVVNVYCHHPSDLRSmagAASVrDTEQLFFFCPRSEREVHGGRPVRTTPSGYWKATGSPSC 107 69***************************99***************843442222244588********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ ++++g+k+t+vfy+grap+g+kt+W m+ey++ PH01002777G0100 108 VFSSANKVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 144 ***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-45 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.633 | 13 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-21 | 15 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MASSSSGSSS DPFTPGFRFY PTEKELLGFY LRHRLANTRP QIERVIPVVN VYCHHPSDLR 60 SMAGAASVRD TEQLFFFCPR SEREVHGGRP VRTTPSGYWK ATGSPSCVFS SANKVIGVKR 120 TMVFYQGRAP TGTKTRWKMN EYKAVADAAV APLRLRNEFS VCRVYISTGT LRSFDRRPLN 180 QPGHDQAAHR HVPSSARADF TNLADDVING TGQPENSHDS SSSGSRGIVD VDGSDDATID 240 WNSLITTAET ASFNDIDFNS SIIGAWPQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-26 | 8 | 165 | 7 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-26 | 8 | 165 | 7 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-26 | 8 | 165 | 7 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-26 | 8 | 165 | 7 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-26 | 8 | 165 | 10 | 166 | NAC domain-containing protein 19 |
3swm_B | 5e-26 | 8 | 165 | 10 | 166 | NAC domain-containing protein 19 |
3swm_C | 5e-26 | 8 | 165 | 10 | 166 | NAC domain-containing protein 19 |
3swm_D | 5e-26 | 8 | 165 | 10 | 166 | NAC domain-containing protein 19 |
3swp_A | 5e-26 | 8 | 165 | 10 | 166 | NAC domain-containing protein 19 |
3swp_B | 5e-26 | 8 | 165 | 10 | 166 | NAC domain-containing protein 19 |
3swp_C | 5e-26 | 8 | 165 | 10 | 166 | NAC domain-containing protein 19 |
3swp_D | 5e-26 | 8 | 165 | 10 | 166 | NAC domain-containing protein 19 |
4dul_A | 4e-26 | 8 | 165 | 7 | 163 | NAC domain-containing protein 19 |
4dul_B | 4e-26 | 8 | 165 | 7 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002777G0100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094245 | 0.0 | FP094245.1 Phyllostachys edulis cDNA clone: bphylf035k07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662743.1 | 1e-108 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-65 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0E0BFG7 | 1e-111 | A0A0E0BFG7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM11G03170.1 | 1e-111 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 5e-68 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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